miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16250 5' -52 NC_004084.1 + 15 0.67 0.862646
Target:  5'- gGUCUUcgaaGUCG-AGGUCGugUCGGccACCg -3'
miRNA:   3'- gCGGAA----CAGCgUCUAGCugAGCU--UGG- -5'
16250 5' -52 NC_004084.1 + 397 0.71 0.662716
Target:  5'- cCGCCgaUGUCGCAGAcgucgUCGAUcUGGACg -3'
miRNA:   3'- -GCGGa-ACAGCGUCU-----AGCUGaGCUUGg -5'
16250 5' -52 NC_004084.1 + 3779 0.66 0.913809
Target:  5'- uGCCgUUG-CGCGGGUUGACgacgauUCGAuacgugacGCCg -3'
miRNA:   3'- gCGG-AACaGCGUCUAGCUG------AGCU--------UGG- -5'
16250 5' -52 NC_004084.1 + 3910 0.68 0.798698
Target:  5'- uGCCg-GUUGUAGucGUCGAaggcgucCUCGAACCg -3'
miRNA:   3'- gCGGaaCAGCGUC--UAGCU-------GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 4191 0.73 0.520338
Target:  5'- uCGCUccgacGUCG-AGAUcCGACUCGAGCCg -3'
miRNA:   3'- -GCGGaa---CAGCgUCUA-GCUGAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 8139 0.69 0.779924
Target:  5'- aCGCCUgGUCgGCAGAcgUCGAggacCUCGccGCCa -3'
miRNA:   3'- -GCGGAaCAG-CGUCU--AGCU----GAGCu-UGG- -5'
16250 5' -52 NC_004084.1 + 8283 0.66 0.886158
Target:  5'- aCGaCCUcGucauccggacgaUCGCGGGccUCGACUCGAaguACCg -3'
miRNA:   3'- -GC-GGAaC------------AGCGUCU--AGCUGAGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 9404 0.7 0.706535
Target:  5'- aCGUCgUGUCGguCAcGAUCGACaCGGACCg -3'
miRNA:   3'- -GCGGaACAGC--GU-CUAGCUGaGCUUGG- -5'
16250 5' -52 NC_004084.1 + 10244 0.73 0.541729
Target:  5'- uCGCCUggugaGUCGCGG-UCGGCgucCGGAUCa -3'
miRNA:   3'- -GCGGAa----CAGCGUCuAGCUGa--GCUUGG- -5'
16250 5' -52 NC_004084.1 + 11599 0.69 0.759559
Target:  5'- uCGCCgcagUUGUCGCAGGUcgCGACguugCuGGCCu -3'
miRNA:   3'- -GCGG----AACAGCGUCUA--GCUGa---GcUUGG- -5'
16250 5' -52 NC_004084.1 + 12023 0.66 0.886158
Target:  5'- uCGCC--GUCGCcGAucgUCGAUUCGA-CCu -3'
miRNA:   3'- -GCGGaaCAGCGuCU---AGCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 12440 0.7 0.728047
Target:  5'- aCGCCgUGacgacCGCAGGagcCGACUCGGACa -3'
miRNA:   3'- -GCGGaACa----GCGUCUa--GCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 14738 0.66 0.886158
Target:  5'- gCGCCcguccGUCGCAGGcacUCGGCgCGGuagGCCc -3'
miRNA:   3'- -GCGGaa---CAGCGUCU---AGCUGaGCU---UGG- -5'
16250 5' -52 NC_004084.1 + 15179 0.66 0.899835
Target:  5'- aGCCgUGgUGCGGAUUccagcugGACUCGcACCa -3'
miRNA:   3'- gCGGaACaGCGUCUAG-------CUGAGCuUGG- -5'
16250 5' -52 NC_004084.1 + 18112 0.67 0.878576
Target:  5'- gGUCgagGUCGgGGAUgucCGGCUCGGcCCg -3'
miRNA:   3'- gCGGaa-CAGCgUCUA---GCUGAGCUuGG- -5'
16250 5' -52 NC_004084.1 + 18575 0.73 0.530994
Target:  5'- gCGCCgcgGcCGCcGAUgGACUCGAGCg -3'
miRNA:   3'- -GCGGaa-CaGCGuCUAgCUGAGCUUGg -5'
16250 5' -52 NC_004084.1 + 19554 0.66 0.907306
Target:  5'- uGUCUUG-CGaCcGGUCGAgauccucacuCUCGAGCCa -3'
miRNA:   3'- gCGGAACaGC-GuCUAGCU----------GAGCUUGG- -5'
16250 5' -52 NC_004084.1 + 20850 0.67 0.878576
Target:  5'- uCGCCgaggGUgGCAcGUCGAC-CGcGCCg -3'
miRNA:   3'- -GCGGaa--CAgCGUcUAGCUGaGCuUGG- -5'
16250 5' -52 NC_004084.1 + 22806 0.67 0.878576
Target:  5'- gCGUCgagagggcGUCaCGGAUCGAUccguUCGAGCCg -3'
miRNA:   3'- -GCGGaa------CAGcGUCUAGCUG----AGCUUGG- -5'
16250 5' -52 NC_004084.1 + 26297 0.66 0.913809
Target:  5'- gGUCU-GUCGacCAGAUCGugUCGuACg -3'
miRNA:   3'- gCGGAaCAGC--GUCUAGCugAGCuUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.