miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 44029 0.67 0.399741
Target:  5'- --cAUCGCCC-CGAUCUCGCCGagUGGg -3'
miRNA:   3'- cgcUAGCGGGaGCUAGGGCGGCg-GCU- -5'
16251 3' -61 NC_004084.1 + 718 0.67 0.391123
Target:  5'- uGCGuucaucgucUCGuCCCUCGAUauaCGCCGCCu- -3'
miRNA:   3'- -CGCu--------AGC-GGGAGCUAgg-GCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 5092 0.67 0.391123
Target:  5'- aGCGGUCuGCCCaggCGGg-CCGCCagcugGCCGAc -3'
miRNA:   3'- -CGCUAG-CGGGa--GCUagGGCGG-----CGGCU- -5'
16251 3' -61 NC_004084.1 + 512 0.67 0.391123
Target:  5'- aGCGGUCGgaCUUCGAUgagcgguucgCCCGCCGguUCGAg -3'
miRNA:   3'- -CGCUAGCg-GGAGCUA----------GGGCGGC--GGCU- -5'
16251 3' -61 NC_004084.1 + 19360 0.67 0.387709
Target:  5'- cCGAUCGCCCUCGuaguacucggcaugAugcugauUCCaCGCaUGCCGAg -3'
miRNA:   3'- cGCUAGCGGGAGC--------------U-------AGG-GCG-GCGGCU- -5'
16251 3' -61 NC_004084.1 + 2249 0.68 0.382626
Target:  5'- -aGAUC-UCCUCGGUCuuGCCGuuGu -3'
miRNA:   3'- cgCUAGcGGGAGCUAGggCGGCggCu -5'
16251 3' -61 NC_004084.1 + 36081 0.68 0.374254
Target:  5'- aGUucUCGCCCUCGAguUCCuCGUCGUCu- -3'
miRNA:   3'- -CGcuAGCGGGAGCU--AGG-GCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 28602 0.68 0.374254
Target:  5'- aGUGGUCGUCUUCGGugaUCUCGUagcgGCCGGa -3'
miRNA:   3'- -CGCUAGCGGGAGCU---AGGGCGg---CGGCU- -5'
16251 3' -61 NC_004084.1 + 57390 0.68 0.366006
Target:  5'- uCGAgcgCGCCCcCGAUCgcgucgaCGUCGCCGGc -3'
miRNA:   3'- cGCUa--GCGGGaGCUAGg------GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 7096 0.68 0.366006
Target:  5'- cGCGggCGCaCUCGAUCgCCucgGUCGCCGu -3'
miRNA:   3'- -CGCuaGCGgGAGCUAG-GG---CGGCGGCu -5'
16251 3' -61 NC_004084.1 + 21488 0.68 0.357884
Target:  5'- gGCGAUCG-CCUCGGUUgCGUCGuaGGc -3'
miRNA:   3'- -CGCUAGCgGGAGCUAGgGCGGCggCU- -5'
16251 3' -61 NC_004084.1 + 11411 0.68 0.357884
Target:  5'- cGCGA-CGUCCUCGAggaaCUCGCgGUCGu -3'
miRNA:   3'- -CGCUaGCGGGAGCUa---GGGCGgCGGCu -5'
16251 3' -61 NC_004084.1 + 54844 0.68 0.357884
Target:  5'- cGCGGUCGCCCgcucgcuuuccaUCGGaccgaCCUGCCaguucgagugucGCCGAa -3'
miRNA:   3'- -CGCUAGCGGG------------AGCUa----GGGCGG------------CGGCU- -5'
16251 3' -61 NC_004084.1 + 57122 0.68 0.357884
Target:  5'- uCGAggaCGUCCUCGGUgUCGCCGUCu- -3'
miRNA:   3'- cGCUa--GCGGGAGCUAgGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 53065 0.68 0.357884
Target:  5'- -aGAUCGUCC-CaGUCCuCGCCGCCc- -3'
miRNA:   3'- cgCUAGCGGGaGcUAGG-GCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 5749 0.68 0.357884
Target:  5'- aUGAUCG-CCUCGAcgacgaucuccgUCUCGCCgcaGCCGAg -3'
miRNA:   3'- cGCUAGCgGGAGCU------------AGGGCGG---CGGCU- -5'
16251 3' -61 NC_004084.1 + 35488 0.68 0.34989
Target:  5'- gGCGAUCGCCga-GAUCCCGaCCaaCGGu -3'
miRNA:   3'- -CGCUAGCGGgagCUAGGGC-GGcgGCU- -5'
16251 3' -61 NC_004084.1 + 32399 0.68 0.342023
Target:  5'- uCGAgucCGCgUUCGGUCCCGUCGaCGAg -3'
miRNA:   3'- cGCUa--GCGgGAGCUAGGGCGGCgGCU- -5'
16251 3' -61 NC_004084.1 + 29398 0.69 0.337365
Target:  5'- gGUGAUgcCGCCCUCGAugggcUCCUGCaucgcggucaucagGCCGAc -3'
miRNA:   3'- -CGCUA--GCGGGAGCU-----AGGGCGg-------------CGGCU- -5'
16251 3' -61 NC_004084.1 + 14650 0.69 0.334285
Target:  5'- gGCGAgCGCCCagUCGAUgCCCGCgagcgucccgGCCGGg -3'
miRNA:   3'- -CGCUaGCGGG--AGCUA-GGGCGg---------CGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.