Results 21 - 40 of 100 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16251 | 3' | -61 | NC_004084.1 | + | 29505 | 0.66 | 0.444596 |
Target: 5'- cCGAcgUCGCUCUCGGgcacaCCCGCuuCGCCa- -3' miRNA: 3'- cGCU--AGCGGGAGCUa----GGGCG--GCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 40339 | 0.66 | 0.444596 |
Target: 5'- -aGAUCGUCCUCGAagggcggcacaUCgaCCgcggcaucaaaGCCGCCGAc -3' miRNA: 3'- cgCUAGCGGGAGCU-----------AG--GG-----------CGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 21494 | 0.66 | 0.444596 |
Target: 5'- gGCGAUaucuggaaCGCgauUCUCGAaacgUUCGCCGCCGAg -3' miRNA: 3'- -CGCUA--------GCG---GGAGCUa---GGGCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 41945 | 0.66 | 0.444596 |
Target: 5'- aUGGUCGUCuCUCGAggcCCUGCCGgaaCGAc -3' miRNA: 3'- cGCUAGCGG-GAGCUa--GGGCGGCg--GCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 35006 | 0.67 | 0.435398 |
Target: 5'- aGCGAUCaGCUgggCUCGAgUUUCGUCGUCGAu -3' miRNA: 3'- -CGCUAG-CGG---GAGCU-AGGGCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 50133 | 0.67 | 0.435398 |
Target: 5'- cGCGAUCGUCCggaugaCGAggUCGuuGUCGAg -3' miRNA: 3'- -CGCUAGCGGGa-----GCUagGGCggCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 47322 | 0.67 | 0.435398 |
Target: 5'- cGCGAaCGg---CGAUCUCGUCGCCGAc -3' miRNA: 3'- -CGCUaGCgggaGCUAGGGCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 3137 | 0.67 | 0.435398 |
Target: 5'- uCGAUacgcaGCUgaCGAUCUacaCGCCGCCGAc -3' miRNA: 3'- cGCUAg----CGGgaGCUAGG---GCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 1785 | 0.67 | 0.435398 |
Target: 5'- gGUGGUCGUUCUgagccaCGAUCCgGCgaacuCGCCGAc -3' miRNA: 3'- -CGCUAGCGGGA------GCUAGGgCG-----GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 55219 | 0.67 | 0.435398 |
Target: 5'- gGUGAgcuUCGCcaccgCCUCGuucacGUCCuCGCCGUCGAc -3' miRNA: 3'- -CGCU---AGCG-----GGAGC-----UAGG-GCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 21214 | 0.67 | 0.435398 |
Target: 5'- -aGAUCGUCaggCGGuacuUCCCGUCGUCGGu -3' miRNA: 3'- cgCUAGCGGga-GCU----AGGGCGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 57533 | 0.67 | 0.426311 |
Target: 5'- -gGAUCGUCCUCcAUCuCCuCCGCCa- -3' miRNA: 3'- cgCUAGCGGGAGcUAG-GGcGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 48042 | 0.67 | 0.426311 |
Target: 5'- uCGAUCGCCugCUCGAcUCUCGUcguuCGUCGAa -3' miRNA: 3'- cGCUAGCGG--GAGCU-AGGGCG----GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 9056 | 0.67 | 0.423607 |
Target: 5'- cUGGUUGCCCUUcuggaacguucggaGAUCgCCGCgguaCGCCGAc -3' miRNA: 3'- cGCUAGCGGGAG--------------CUAG-GGCG----GCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 22809 | 0.67 | 0.417338 |
Target: 5'- uCGAgagggCGUCacggaUCGAUCCguucgaGCCGCCGAg -3' miRNA: 3'- cGCUa----GCGGg----AGCUAGGg-----CGGCGGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 477 | 0.67 | 0.417338 |
Target: 5'- cCGGuUCGUcgCCUCGAUCCUGCUGgCGc -3' miRNA: 3'- cGCU-AGCG--GGAGCUAGGGCGGCgGCu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 12211 | 0.67 | 0.417338 |
Target: 5'- aUGAUCGUcgacgcauCCgacgaCGAUCUCGCCGCCu- -3' miRNA: 3'- cGCUAGCG--------GGa----GCUAGGGCGGCGGcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 38393 | 0.67 | 0.40848 |
Target: 5'- cGCGAucgUCGUCCUCGAg--CGCCGaUCGGa -3' miRNA: 3'- -CGCU---AGCGGGAGCUaggGCGGC-GGCU- -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 7366 | 0.67 | 0.40848 |
Target: 5'- cGCGGuUCGCuCCgacggUGAUCCCGCCuGCg-- -3' miRNA: 3'- -CGCU-AGCG-GGa----GCUAGGGCGG-CGgcu -5' |
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16251 | 3' | -61 | NC_004084.1 | + | 11105 | 0.67 | 0.40848 |
Target: 5'- -aGAUCGCCguucgcggCUCGAaggaugUCCCagaGCCGCUGGa -3' miRNA: 3'- cgCUAGCGG--------GAGCU------AGGG---CGGCGGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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