miRNA display CGI


Results 41 - 60 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 11846 0.7 0.25146
Target:  5'- aCGAUCGCCg-CGAUgCCGauGCCGAg -3'
miRNA:   3'- cGCUAGCGGgaGCUAgGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 16652 0.69 0.326676
Target:  5'- uCGAcgUCGUCCgggaGGUCCuCGUCGCCGGc -3'
miRNA:   3'- cGCU--AGCGGGag--CUAGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 36081 0.68 0.374254
Target:  5'- aGUucUCGCCCUCGAguUCCuCGUCGUCu- -3'
miRNA:   3'- -CGcuAGCGGGAGCU--AGG-GCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 21539 0.7 0.256413
Target:  5'- gGCGAUCGCaucuuccgucggCUUGAgUCCaCGCUGCCGGa -3'
miRNA:   3'- -CGCUAGCGg-----------GAGCU-AGG-GCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 2249 0.68 0.382626
Target:  5'- -aGAUC-UCCUCGGUCuuGCCGuuGu -3'
miRNA:   3'- cgCUAGcGGGAGCUAGggCGGCggCu -5'
16251 3' -61 NC_004084.1 + 56010 0.74 0.140121
Target:  5'- cGCGuacuUUGCCCUCGA-CUCGUCGUCGGa -3'
miRNA:   3'- -CGCu---AGCGGGAGCUaGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 54844 0.68 0.357884
Target:  5'- cGCGGUCGCCCgcucgcuuuccaUCGGaccgaCCUGCCaguucgagugucGCCGAa -3'
miRNA:   3'- -CGCUAGCGGG------------AGCUa----GGGCGG------------CGGCU- -5'
16251 3' -61 NC_004084.1 + 6999 0.74 0.143843
Target:  5'- aGCGuGUCGCCCUCGAaggCCUcgacggcgucgGCCGCCa- -3'
miRNA:   3'- -CGC-UAGCGGGAGCUa--GGG-----------CGGCGGcu -5'
16251 3' -61 NC_004084.1 + 1503 0.73 0.172515
Target:  5'- --cGUCGCCCUCGAgCUCGaaGCCGAu -3'
miRNA:   3'- cgcUAGCGGGAGCUaGGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 50954 0.71 0.22787
Target:  5'- cGCcGUCGCCgCUCGAg-UCGCCGUCGGa -3'
miRNA:   3'- -CGcUAGCGG-GAGCUagGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 49271 0.71 0.233586
Target:  5'- aGCGAUUacCCCUCGAcUUCCGCCcgacggacGCCGAu -3'
miRNA:   3'- -CGCUAGc-GGGAGCU-AGGGCGG--------CGGCU- -5'
16251 3' -61 NC_004084.1 + 41108 0.71 0.24538
Target:  5'- uCGAUCGUaaUCUCGAUgugCUCGCCGCCa- -3'
miRNA:   3'- cGCUAGCG--GGAGCUA---GGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 23204 0.71 0.24538
Target:  5'- cGCGAUCGUCggCUCGAUCCCGaCGauuCGGa -3'
miRNA:   3'- -CGCUAGCGG--GAGCUAGGGCgGCg--GCU- -5'
16251 3' -61 NC_004084.1 + 53207 0.7 0.263992
Target:  5'- cGUGAUCGU-CUCGAgcgugcugCCUGCCGCCu- -3'
miRNA:   3'- -CGCUAGCGgGAGCUa-------GGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 9139 0.7 0.270446
Target:  5'- -gGAaCGCCUUCGAcuUCgCCGUCGCCGu -3'
miRNA:   3'- cgCUaGCGGGAGCU--AG-GGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 19153 0.7 0.290568
Target:  5'- cGCGAUCGacgaccaCCaUCu-UCCCGCCGCCc- -3'
miRNA:   3'- -CGCUAGCg------GG-AGcuAGGGCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 27979 0.69 0.297532
Target:  5'- aGCGGgacgUCGUCCUCGccaucgcUUCCGUCGCCGc -3'
miRNA:   3'- -CGCU----AGCGGGAGCu------AGGGCGGCGGCu -5'
16251 3' -61 NC_004084.1 + 1275 0.69 0.334285
Target:  5'- gGUGAUCGCCCgggGAUgCCCGgCuCGCuCGAu -3'
miRNA:   3'- -CGCUAGCGGGag-CUA-GGGC-G-GCG-GCU- -5'
16251 3' -61 NC_004084.1 + 14650 0.69 0.334285
Target:  5'- gGCGAgCGCCCagUCGAUgCCCGCgagcgucccgGCCGGg -3'
miRNA:   3'- -CGCUaGCGGG--AGCUA-GGGCGg---------CGGCU- -5'
16251 3' -61 NC_004084.1 + 21488 0.68 0.357884
Target:  5'- gGCGAUCG-CCUCGGUUgCGUCGuaGGc -3'
miRNA:   3'- -CGCUAGCgGGAGCUAGgGCGGCggCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.