miRNA display CGI


Results 21 - 40 of 100 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16251 3' -61 NC_004084.1 + 22809 0.67 0.417338
Target:  5'- uCGAgagggCGUCacggaUCGAUCCguucgaGCCGCCGAg -3'
miRNA:   3'- cGCUa----GCGGg----AGCUAGGg-----CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 9056 0.67 0.423607
Target:  5'- cUGGUUGCCCUUcuggaacguucggaGAUCgCCGCgguaCGCCGAc -3'
miRNA:   3'- cGCUAGCGGGAG--------------CUAG-GGCG----GCGGCU- -5'
16251 3' -61 NC_004084.1 + 50133 0.67 0.435398
Target:  5'- cGCGAUCGUCCggaugaCGAggUCGuuGUCGAg -3'
miRNA:   3'- -CGCUAGCGGGa-----GCUagGGCggCGGCU- -5'
16251 3' -61 NC_004084.1 + 14173 0.66 0.453902
Target:  5'- cCGGUCGuCCCgucguagaCGAgcUCCCaGCCGUCGGc -3'
miRNA:   3'- cGCUAGC-GGGa-------GCU--AGGG-CGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 21488 0.68 0.357884
Target:  5'- gGCGAUCG-CCUCGGUUgCGUCGuaGGc -3'
miRNA:   3'- -CGCUAGCgGGAGCUAGgGCGGCggCU- -5'
16251 3' -61 NC_004084.1 + 19360 0.67 0.387709
Target:  5'- cCGAUCGCCCUCGuaguacucggcaugAugcugauUCCaCGCaUGCCGAg -3'
miRNA:   3'- cGCUAGCGGGAGC--------------U-------AGG-GCG-GCGGCU- -5'
16251 3' -61 NC_004084.1 + 48042 0.67 0.426311
Target:  5'- uCGAUCGCCugCUCGAcUCUCGUcguuCGUCGAa -3'
miRNA:   3'- cGCUAGCGG--GAGCU-AGGGCG----GCGGCU- -5'
16251 3' -61 NC_004084.1 + 49505 0.66 0.463313
Target:  5'- -gGAUCGUCUUCGGcUUCCGCCucuucguCCGAg -3'
miRNA:   3'- cgCUAGCGGGAGCU-AGGGCGGc------GGCU- -5'
16251 3' -61 NC_004084.1 + 718 0.67 0.391123
Target:  5'- uGCGuucaucgucUCGuCCCUCGAUauaCGCCGCCu- -3'
miRNA:   3'- -CGCu--------AGC-GGGAGCUAgg-GCGGCGGcu -5'
16251 3' -61 NC_004084.1 + 2761 0.66 0.463313
Target:  5'- gGCGAUgGCCUUCGucUCCUGCgUGCaGAc -3'
miRNA:   3'- -CGCUAgCGGGAGCu-AGGGCG-GCGgCU- -5'
16251 3' -61 NC_004084.1 + 57533 0.67 0.426311
Target:  5'- -gGAUCGUCCUCcAUCuCCuCCGCCa- -3'
miRNA:   3'- cgCUAGCGGGAGcUAG-GGcGGCGGcu -5'
16251 3' -61 NC_004084.1 + 38393 0.67 0.40848
Target:  5'- cGCGAucgUCGUCCUCGAg--CGCCGaUCGGa -3'
miRNA:   3'- -CGCU---AGCGGGAGCUaggGCGGC-GGCU- -5'
16251 3' -61 NC_004084.1 + 21214 0.67 0.435398
Target:  5'- -aGAUCGUCaggCGGuacuUCCCGUCGUCGGu -3'
miRNA:   3'- cgCUAGCGGga-GCU----AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 35006 0.67 0.435398
Target:  5'- aGCGAUCaGCUgggCUCGAgUUUCGUCGUCGAu -3'
miRNA:   3'- -CGCUAG-CGG---GAGCU-AGGGCGGCGGCU- -5'
16251 3' -61 NC_004084.1 + 29505 0.66 0.444596
Target:  5'- cCGAcgUCGCUCUCGGgcacaCCCGCuuCGCCa- -3'
miRNA:   3'- cGCU--AGCGGGAGCUa----GGGCG--GCGGcu -5'
16251 3' -61 NC_004084.1 + 36813 0.66 0.453902
Target:  5'- -aGAUCGuCCCgagaCGGUCCagcuGCuCGCCGGu -3'
miRNA:   3'- cgCUAGC-GGGa---GCUAGGg---CG-GCGGCU- -5'
16251 3' -61 NC_004084.1 + 1275 0.69 0.334285
Target:  5'- gGUGAUCGCCCgggGAUgCCCGgCuCGCuCGAu -3'
miRNA:   3'- -CGCUAGCGGGag-CUA-GGGC-G-GCG-GCU- -5'
16251 3' -61 NC_004084.1 + 11411 0.68 0.357884
Target:  5'- cGCGA-CGUCCUCGAggaaCUCGCgGUCGu -3'
miRNA:   3'- -CGCUaGCGGGAGCUa---GGGCGgCGGCu -5'
16251 3' -61 NC_004084.1 + 54844 0.68 0.357884
Target:  5'- cGCGGUCGCCCgcucgcuuuccaUCGGaccgaCCUGCCaguucgagugucGCCGAa -3'
miRNA:   3'- -CGCUAGCGGG------------AGCUa----GGGCGG------------CGGCU- -5'
16251 3' -61 NC_004084.1 + 2249 0.68 0.382626
Target:  5'- -aGAUC-UCCUCGGUCuuGCCGuuGu -3'
miRNA:   3'- cgCUAGcGGGAGCUAGggCGGCggCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.