miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16255 5' -50.5 NC_004084.1 + 55773 1.07 0.004959
Target:  5'- uCGACUGGACGAUGAACACGAUCGAGUc -3'
miRNA:   3'- -GCUGACCUGCUACUUGUGCUAGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 39458 0.73 0.653935
Target:  5'- cCGACUGG-CGc-GAGCGcCGAUCGAGg -3'
miRNA:   3'- -GCUGACCuGCuaCUUGU-GCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 18159 0.72 0.676259
Target:  5'- gCGAgUGGACGAUGGA---GAUCGAGc -3'
miRNA:   3'- -GCUgACCUGCUACUUgugCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 7855 0.72 0.687362
Target:  5'- aCGAguuCUGGACGG---ACAUGAUCGAGg -3'
miRNA:   3'- -GCU---GACCUGCUacuUGUGCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 14155 0.72 0.698409
Target:  5'- uGGCUGGA---UGAACACGGuaUCGAGg -3'
miRNA:   3'- gCUGACCUgcuACUUGUGCU--AGCUCa -5'
16255 5' -50.5 NC_004084.1 + 40938 0.71 0.731105
Target:  5'- gGGCUGGACGGacguCGCGAaCGAGUu -3'
miRNA:   3'- gCUGACCUGCUacuuGUGCUaGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 12601 0.71 0.752408
Target:  5'- aGGCaccgUGGAuCGGccaGAGCGCGAUCGGGUa -3'
miRNA:   3'- gCUG----ACCU-GCUa--CUUGUGCUAGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 28279 0.71 0.762875
Target:  5'- uCGACucgUGGACGG-GAGucuCGCGAUCGGGg -3'
miRNA:   3'- -GCUG---ACCUGCUaCUU---GUGCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 1053 0.7 0.78338
Target:  5'- cCGAggcauCUGGGCGAUGAACAaccaGAUCcAGg -3'
miRNA:   3'- -GCU-----GACCUGCUACUUGUg---CUAGcUCa -5'
16255 5' -50.5 NC_004084.1 + 51136 0.7 0.812886
Target:  5'- aCGcUUGGGCGAUcccgaacgaGGAgGCGAUCGAGa -3'
miRNA:   3'- -GCuGACCUGCUA---------CUUgUGCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 41440 0.7 0.812886
Target:  5'- -aGCUGGGCc---GACGCGAUCGAGg -3'
miRNA:   3'- gcUGACCUGcuacUUGUGCUAGCUCa -5'
16255 5' -50.5 NC_004084.1 + 4460 0.69 0.844173
Target:  5'- cCGACUGGACGAUcgaguucgagcuggcGAagcccgACACGAaacugcaggaugUCGAGa -3'
miRNA:   3'- -GCUGACCUGCUA---------------CU------UGUGCU------------AGCUCa -5'
16255 5' -50.5 NC_004084.1 + 57979 0.68 0.866317
Target:  5'- gGACUGaACGAUgGGAUACGAcuaCGAGUg -3'
miRNA:   3'- gCUGACcUGCUA-CUUGUGCUa--GCUCA- -5'
16255 5' -50.5 NC_004084.1 + 1980 0.68 0.885247
Target:  5'- gGACaacgGGAugcagacuacgucguCGA-GGACGCGAUCGAGUu -3'
miRNA:   3'- gCUGa---CCU---------------GCUaCUUGUGCUAGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 22133 0.68 0.887506
Target:  5'- cCGGCUGGgaaGCGAUGAcugacCGCGAgcgccucggcgcacUCGAGg -3'
miRNA:   3'- -GCUGACC---UGCUACUu----GUGCU--------------AGCUCa -5'
16255 5' -50.5 NC_004084.1 + 55918 0.68 0.889741
Target:  5'- gGGCUGGAuCGG-GAAUGCGAUCGu-- -3'
miRNA:   3'- gCUGACCU-GCUaCUUGUGCUAGCuca -5'
16255 5' -50.5 NC_004084.1 + 24018 0.68 0.889741
Target:  5'- aGAC-GG-CGAUGGACGCGGUUGcGGg -3'
miRNA:   3'- gCUGaCCuGCUACUUGUGCUAGC-UCa -5'
16255 5' -50.5 NC_004084.1 + 24048 0.67 0.904007
Target:  5'- aGAC-GG-CGAUGGACGCGGUUGcGg -3'
miRNA:   3'- gCUGaCCuGCUACUUGUGCUAGCuCa -5'
16255 5' -50.5 NC_004084.1 + 21837 0.67 0.910722
Target:  5'- -cGCUGGACGAUGcagggauuGGCgACGA-CGAGUu -3'
miRNA:   3'- gcUGACCUGCUAC--------UUG-UGCUaGCUCA- -5'
16255 5' -50.5 NC_004084.1 + 10880 0.67 0.910722
Target:  5'- -cACUGGcCgGAUGAugGCGAucgUCGGGUa -3'
miRNA:   3'- gcUGACCuG-CUACUugUGCU---AGCUCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.