Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16255 | 5' | -50.5 | NC_004084.1 | + | 43338 | 0.66 | 0.940014 |
Target: 5'- aCGAgUGGACGGUcucGAACGCcgaGUCGAa- -3' miRNA: 3'- -GCUgACCUGCUA---CUUGUGc--UAGCUca -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 24018 | 0.68 | 0.889741 |
Target: 5'- aGAC-GG-CGAUGGACGCGGUUGcGGg -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAGC-UCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 55918 | 0.68 | 0.889741 |
Target: 5'- gGGCUGGAuCGG-GAAUGCGAUCGu-- -3' miRNA: 3'- gCUGACCU-GCUaCUUGUGCUAGCuca -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 24048 | 0.67 | 0.904007 |
Target: 5'- aGAC-GG-CGAUGGACGCGGUUGcGg -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAGCuCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 21837 | 0.67 | 0.910722 |
Target: 5'- -cGCUGGACGAUGcagggauuGGCgACGA-CGAGUu -3' miRNA: 3'- gcUGACCUGCUAC--------UUG-UGCUaGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 35260 | 0.67 | 0.917153 |
Target: 5'- aCGACcaggaUGGACGAUGGACGa-GUCGGc- -3' miRNA: 3'- -GCUG-----ACCUGCUACUUGUgcUAGCUca -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 1298 | 0.67 | 0.929156 |
Target: 5'- gCGACaccgaGGACGuccucGACugGAUCGAGg -3' miRNA: 3'- -GCUGa----CCUGCuac--UUGugCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 23716 | 0.67 | 0.929156 |
Target: 5'- aGAC-GG-CGAUGGACGCGGU-GAGc -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAgCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 27849 | 0.66 | 0.934728 |
Target: 5'- ----cGGACGAgcugaagGAACACGAccgauUCGAGg -3' miRNA: 3'- gcugaCCUGCUa------CUUGUGCU-----AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 22133 | 0.68 | 0.887506 |
Target: 5'- cCGGCUGGgaaGCGAUGAcugacCGCGAgcgccucggcgcacUCGAGg -3' miRNA: 3'- -GCUGACC---UGCUACUu----GUGCU--------------AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 1980 | 0.68 | 0.885247 |
Target: 5'- gGACaacgGGAugcagacuacgucguCGA-GGACGCGAUCGAGUu -3' miRNA: 3'- gCUGa---CCU---------------GCUaCUUGUGCUAGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 57979 | 0.68 | 0.866317 |
Target: 5'- gGACUGaACGAUgGGAUACGAcuaCGAGUg -3' miRNA: 3'- gCUGACcUGCUA-CUUGUGCUa--GCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 18159 | 0.72 | 0.676259 |
Target: 5'- gCGAgUGGACGAUGGA---GAUCGAGc -3' miRNA: 3'- -GCUgACCUGCUACUUgugCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 7855 | 0.72 | 0.687362 |
Target: 5'- aCGAguuCUGGACGG---ACAUGAUCGAGg -3' miRNA: 3'- -GCU---GACCUGCUacuUGUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 14155 | 0.72 | 0.698409 |
Target: 5'- uGGCUGGA---UGAACACGGuaUCGAGg -3' miRNA: 3'- gCUGACCUgcuACUUGUGCU--AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 40938 | 0.71 | 0.731105 |
Target: 5'- gGGCUGGACGGacguCGCGAaCGAGUu -3' miRNA: 3'- gCUGACCUGCUacuuGUGCUaGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 28279 | 0.71 | 0.762875 |
Target: 5'- uCGACucgUGGACGG-GAGucuCGCGAUCGGGg -3' miRNA: 3'- -GCUG---ACCUGCUaCUU---GUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 1053 | 0.7 | 0.78338 |
Target: 5'- cCGAggcauCUGGGCGAUGAACAaccaGAUCcAGg -3' miRNA: 3'- -GCU-----GACCUGCUACUUGUg---CUAGcUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 51136 | 0.7 | 0.812886 |
Target: 5'- aCGcUUGGGCGAUcccgaacgaGGAgGCGAUCGAGa -3' miRNA: 3'- -GCuGACCUGCUA---------CUUgUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 4460 | 0.69 | 0.844173 |
Target: 5'- cCGACUGGACGAUcgaguucgagcuggcGAagcccgACACGAaacugcaggaugUCGAGa -3' miRNA: 3'- -GCUGACCUGCUA---------------CU------UGUGCU------------AGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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