Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16255 | 5' | -50.5 | NC_004084.1 | + | 1053 | 0.7 | 0.78338 |
Target: 5'- cCGAggcauCUGGGCGAUGAACAaccaGAUCcAGg -3' miRNA: 3'- -GCU-----GACCUGCUACUUGUg---CUAGcUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 1298 | 0.67 | 0.929156 |
Target: 5'- gCGACaccgaGGACGuccucGACugGAUCGAGg -3' miRNA: 3'- -GCUGa----CCUGCuac--UUGugCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 1980 | 0.68 | 0.885247 |
Target: 5'- gGACaacgGGAugcagacuacgucguCGA-GGACGCGAUCGAGUu -3' miRNA: 3'- gCUGa---CCU---------------GCUaCUUGUGCUAGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 4028 | 0.66 | 0.954178 |
Target: 5'- uCGACUGGaACGgcGAuCGCGucaGAGUg -3' miRNA: 3'- -GCUGACC-UGCuaCUuGUGCuagCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 4460 | 0.69 | 0.844173 |
Target: 5'- cCGACUGGACGAUcgaguucgagcuggcGAagcccgACACGAaacugcaggaugUCGAGa -3' miRNA: 3'- -GCUGACCUGCUA---------------CU------UGUGCU------------AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 5188 | 0.66 | 0.945015 |
Target: 5'- aCGACUGGguagACGAggcggcagGcAGCACGcUCGAGa -3' miRNA: 3'- -GCUGACC----UGCUa-------C-UUGUGCuAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 7855 | 0.72 | 0.687362 |
Target: 5'- aCGAguuCUGGACGG---ACAUGAUCGAGg -3' miRNA: 3'- -GCU---GACCUGCUacuUGUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 10367 | 0.66 | 0.949735 |
Target: 5'- uCGACgaacGACGAgagucGAGCagGCGAUCGAGc -3' miRNA: 3'- -GCUGac--CUGCUa----CUUG--UGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 10880 | 0.67 | 0.910722 |
Target: 5'- -cACUGGcCgGAUGAugGCGAucgUCGGGUa -3' miRNA: 3'- gcUGACCuG-CUACUugUGCU---AGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 12601 | 0.71 | 0.752408 |
Target: 5'- aGGCaccgUGGAuCGGccaGAGCGCGAUCGGGUa -3' miRNA: 3'- gCUG----ACCU-GCUa--CUUGUGCUAGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 14155 | 0.72 | 0.698409 |
Target: 5'- uGGCUGGA---UGAACACGGuaUCGAGg -3' miRNA: 3'- gCUGACCUgcuACUUGUGCU--AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 17297 | 0.66 | 0.949735 |
Target: 5'- gCGGCgGuGGCGgcGAGCAC-AUCGAGa -3' miRNA: 3'- -GCUGaC-CUGCuaCUUGUGcUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 18159 | 0.72 | 0.676259 |
Target: 5'- gCGAgUGGACGAUGGA---GAUCGAGc -3' miRNA: 3'- -GCUgACCUGCUACUUgugCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 21837 | 0.67 | 0.910722 |
Target: 5'- -cGCUGGACGAUGcagggauuGGCgACGA-CGAGUu -3' miRNA: 3'- gcUGACCUGCUAC--------UUG-UGCUaGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 22133 | 0.68 | 0.887506 |
Target: 5'- cCGGCUGGgaaGCGAUGAcugacCGCGAgcgccucggcgcacUCGAGg -3' miRNA: 3'- -GCUGACC---UGCUACUu----GUGCU--------------AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 23716 | 0.67 | 0.929156 |
Target: 5'- aGAC-GG-CGAUGGACGCGGU-GAGc -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAgCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 24018 | 0.68 | 0.889741 |
Target: 5'- aGAC-GG-CGAUGGACGCGGUUGcGGg -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAGC-UCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 24048 | 0.67 | 0.904007 |
Target: 5'- aGAC-GG-CGAUGGACGCGGUUGcGg -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAGCuCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 26018 | 0.66 | 0.954178 |
Target: 5'- uCGACgGGAcCGAacgcGGACuCGAUCGAGc -3' miRNA: 3'- -GCUGaCCU-GCUa---CUUGuGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 27849 | 0.66 | 0.934728 |
Target: 5'- ----cGGACGAgcugaagGAACACGAccgauUCGAGg -3' miRNA: 3'- gcugaCCUGCUa------CUUGUGCU-----AGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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