Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16255 | 5' | -50.5 | NC_004084.1 | + | 57979 | 0.68 | 0.866317 |
Target: 5'- gGACUGaACGAUgGGAUACGAcuaCGAGUg -3' miRNA: 3'- gCUGACcUGCUA-CUUGUGCUa--GCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 55918 | 0.68 | 0.889741 |
Target: 5'- gGGCUGGAuCGG-GAAUGCGAUCGu-- -3' miRNA: 3'- gCUGACCU-GCUaCUUGUGCUAGCuca -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 55773 | 1.07 | 0.004959 |
Target: 5'- uCGACUGGACGAUGAACACGAUCGAGUc -3' miRNA: 3'- -GCUGACCUGCUACUUGUGCUAGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 54596 | 0.66 | 0.940014 |
Target: 5'- uCGGCgucGACGAa-GACugGAUCGAGg -3' miRNA: 3'- -GCUGac-CUGCUacUUGugCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 53201 | 0.66 | 0.940014 |
Target: 5'- gCGACUGGAagc--AGCACG-UCGAGUc -3' miRNA: 3'- -GCUGACCUgcuacUUGUGCuAGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 51563 | 0.66 | 0.949735 |
Target: 5'- cCGGCUGGAgGuuUGGuCACGAugaccgucuUCGAGg -3' miRNA: 3'- -GCUGACCUgCu-ACUuGUGCU---------AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 51136 | 0.7 | 0.812886 |
Target: 5'- aCGcUUGGGCGAUcccgaacgaGGAgGCGAUCGAGa -3' miRNA: 3'- -GCuGACCUGCUA---------CUUgUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 43338 | 0.66 | 0.940014 |
Target: 5'- aCGAgUGGACGGUcucGAACGCcgaGUCGAa- -3' miRNA: 3'- -GCUgACCUGCUA---CUUGUGc--UAGCUca -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 41440 | 0.7 | 0.812886 |
Target: 5'- -aGCUGGGCc---GACGCGAUCGAGg -3' miRNA: 3'- gcUGACCUGcuacUUGUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 40938 | 0.71 | 0.731105 |
Target: 5'- gGGCUGGACGGacguCGCGAaCGAGUu -3' miRNA: 3'- gCUGACCUGCUacuuGUGCUaGCUCA- -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 39458 | 0.73 | 0.653935 |
Target: 5'- cCGACUGG-CGc-GAGCGcCGAUCGAGg -3' miRNA: 3'- -GCUGACCuGCuaCUUGU-GCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 37468 | 0.66 | 0.945015 |
Target: 5'- cCGACcccGACG-UGAuCACGGUCGGGa -3' miRNA: 3'- -GCUGac-CUGCuACUuGUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 35260 | 0.67 | 0.917153 |
Target: 5'- aCGACcaggaUGGACGAUGGACGa-GUCGGc- -3' miRNA: 3'- -GCUG-----ACCUGCUACUUGUgcUAGCUca -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 28279 | 0.71 | 0.762875 |
Target: 5'- uCGACucgUGGACGG-GAGucuCGCGAUCGGGg -3' miRNA: 3'- -GCUG---ACCUGCUaCUU---GUGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 27849 | 0.66 | 0.934728 |
Target: 5'- ----cGGACGAgcugaagGAACACGAccgauUCGAGg -3' miRNA: 3'- gcugaCCUGCUa------CUUGUGCU-----AGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 26018 | 0.66 | 0.954178 |
Target: 5'- uCGACgGGAcCGAacgcGGACuCGAUCGAGc -3' miRNA: 3'- -GCUGaCCU-GCUa---CUUGuGCUAGCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 24048 | 0.67 | 0.904007 |
Target: 5'- aGAC-GG-CGAUGGACGCGGUUGcGg -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAGCuCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 24018 | 0.68 | 0.889741 |
Target: 5'- aGAC-GG-CGAUGGACGCGGUUGcGGg -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAGC-UCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 23716 | 0.67 | 0.929156 |
Target: 5'- aGAC-GG-CGAUGGACGCGGU-GAGc -3' miRNA: 3'- gCUGaCCuGCUACUUGUGCUAgCUCa -5' |
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16255 | 5' | -50.5 | NC_004084.1 | + | 22133 | 0.68 | 0.887506 |
Target: 5'- cCGGCUGGgaaGCGAUGAcugacCGCGAgcgccucggcgcacUCGAGg -3' miRNA: 3'- -GCUGACC---UGCUACUu----GUGCU--------------AGCUCa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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