miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16259 3' -55.4 NC_004084.1 + 10387 0.66 0.787799
Target:  5'- uCGACGUCgagCUCGUCGucgUCCaggucgucGACCa -3'
miRNA:   3'- uGCUGCGGag-GAGCAGCua-AGG--------CUGG- -5'
16259 3' -55.4 NC_004084.1 + 16034 0.67 0.702524
Target:  5'- cGCGG-GCCUCCUCGagGAUgcguugcucccgcUCGGCCu -3'
miRNA:   3'- -UGCUgCGGAGGAGCagCUAa------------GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 56120 0.67 0.696181
Target:  5'- gACGucguGCGCCgcagUgUCGUCGGcgUCGACCa -3'
miRNA:   3'- -UGC----UGCGGa---GgAGCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 54188 1.12 0.000816
Target:  5'- aACGACGCCUCCUCGUCGAUUCCGACCg -3'
miRNA:   3'- -UGCUGCGGAGGAGCAGCUAAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 27647 0.66 0.768253
Target:  5'- cGCGuACGCCUCgaggaggUCGcUCGAcUCCGGuCCg -3'
miRNA:   3'- -UGC-UGCGGAGg------AGC-AGCUaAGGCU-GG- -5'
16259 3' -55.4 NC_004084.1 + 37038 0.66 0.768253
Target:  5'- uCGcCGCCUCacggUCGUCGAUgUCGAUg -3'
miRNA:   3'- uGCuGCGGAGg---AGCAGCUAaGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 50551 0.66 0.758274
Target:  5'- aGCGGaGUCUCCUCGaUCaugUCCGuCCa -3'
miRNA:   3'- -UGCUgCGGAGGAGC-AGcuaAGGCuGG- -5'
16259 3' -55.4 NC_004084.1 + 35370 0.66 0.748171
Target:  5'- aACGACGCCacugCCgucagUGUCGAagcUCCaGAUCa -3'
miRNA:   3'- -UGCUGCGGa---GGa----GCAGCUa--AGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 2659 0.66 0.748171
Target:  5'- gUGACGCCUCgUaacCGAUUCCcuggugguucGACCg -3'
miRNA:   3'- uGCUGCGGAGgAgcaGCUAAGG----------CUGG- -5'
16259 3' -55.4 NC_004084.1 + 40891 0.67 0.70674
Target:  5'- gUGACGCCUUCaacaUCGAUaUCCGACg -3'
miRNA:   3'- uGCUGCGGAGGagc-AGCUA-AGGCUGg -5'
16259 3' -55.4 NC_004084.1 + 22339 0.66 0.737955
Target:  5'- gACGGCGaCCucgucgcggUCCUCGUCGuAUcCCcACCa -3'
miRNA:   3'- -UGCUGC-GG---------AGGAGCAGC-UAaGGcUGG- -5'
16259 3' -55.4 NC_004084.1 + 43264 0.66 0.748171
Target:  5'- cCGACGUucaCUCCUCG-CGAUggCUGuACCc -3'
miRNA:   3'- uGCUGCG---GAGGAGCaGCUAa-GGC-UGG- -5'
16259 3' -55.4 NC_004084.1 + 48525 0.66 0.778098
Target:  5'- gACGuACGCCUUCaCGucaUCGGUcgCCGACUc -3'
miRNA:   3'- -UGC-UGCGGAGGaGC---AGCUAa-GGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 18260 0.66 0.737955
Target:  5'- gAUGACGUCUUCgaaccggucgaCGUUGAggCCGAUCa -3'
miRNA:   3'- -UGCUGCGGAGGa----------GCAGCUaaGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 17332 0.66 0.778098
Target:  5'- gGCGACgGCCcgcaucgUCUCGUCGAcguacucgCgGACCg -3'
miRNA:   3'- -UGCUG-CGGa------GGAGCAGCUaa------GgCUGG- -5'
16259 3' -55.4 NC_004084.1 + 54800 0.66 0.748171
Target:  5'- cCGAuCGCCUCgUaGUCGG-UCCaGGCCg -3'
miRNA:   3'- uGCU-GCGGAGgAgCAGCUaAGG-CUGG- -5'
16259 3' -55.4 NC_004084.1 + 19199 0.67 0.727638
Target:  5'- gACGACGUCUCCgacagaGAUgucgCCGugCg -3'
miRNA:   3'- -UGCUGCGGAGGagcag-CUAa---GGCugG- -5'
16259 3' -55.4 NC_004084.1 + 11854 0.67 0.696181
Target:  5'- cGCGAUGCCga--UGcCGAgUCCGACCa -3'
miRNA:   3'- -UGCUGCGGaggaGCaGCUaAGGCUGG- -5'
16259 3' -55.4 NC_004084.1 + 3180 0.66 0.778098
Target:  5'- -gGAUcaCCUUgUCGUCGGUUCCGAg- -3'
miRNA:   3'- ugCUGc-GGAGgAGCAGCUAAGGCUgg -5'
16259 3' -55.4 NC_004084.1 + 811 0.66 0.768253
Target:  5'- gGCGAuCGUggaggUCCUCGUCGAUgCUGAUg -3'
miRNA:   3'- -UGCU-GCGg----AGGAGCAGCUAaGGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.