miRNA display CGI


Results 41 - 60 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16265 3' -50.9 NC_004084.1 + 47384 0.71 0.769827
Target:  5'- gCGUCGUCGACGgcgaGCUCcAGGg--CGCg -3'
miRNA:   3'- -GCAGCAGCUGCa---UGAGcUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 48680 0.7 0.778894
Target:  5'- gGUCG-CGACGUGggagaucCUCGAA--GCCGCc -3'
miRNA:   3'- gCAGCaGCUGCAU-------GAGCUUcaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 905 0.7 0.779894
Target:  5'- --cUGUCGGCGUcgUCGGAGUucGCUGCg -3'
miRNA:   3'- gcaGCAGCUGCAugAGCUUCA--UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 41366 0.7 0.798589
Target:  5'- uCGUCGUCGACGauUACgaacucucgaUCGAGGUagagggcgaggagGCCGg -3'
miRNA:   3'- -GCAGCAGCUGC--AUG----------AGCUUCA-------------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 49323 0.7 0.799557
Target:  5'- -cUCGUCGACaucGCccggUCGgcGUACCGCg -3'
miRNA:   3'- gcAGCAGCUGca-UG----AGCuuCAUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 11406 0.7 0.799557
Target:  5'- uCGaUCG-CGACGUcCUCGAGGaACuCGCg -3'
miRNA:   3'- -GC-AGCaGCUGCAuGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 57120 0.7 0.799557
Target:  5'- aGUCGagGACGUcCUCGguGUcGCCGUc -3'
miRNA:   3'- gCAGCagCUGCAuGAGCuuCA-UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 48429 0.7 0.799557
Target:  5'- -uUCGUCGACGUcgUCGGccAGUACgGUg -3'
miRNA:   3'- gcAGCAGCUGCAugAGCU--UCAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 23036 0.7 0.809129
Target:  5'- gGUCGUCGACGUGauCUUGgcGcacuUCGCg -3'
miRNA:   3'- gCAGCAGCUGCAU--GAGCuuCau--GGCG- -5'
16265 3' -50.9 NC_004084.1 + 18540 0.7 0.822215
Target:  5'- gGUCGauaccgcacugcagcUCaGCGUGCUCGAcGGcGCCGCg -3'
miRNA:   3'- gCAGC---------------AGcUGCAUGAGCU-UCaUGGCG- -5'
16265 3' -50.9 NC_004084.1 + 29470 0.69 0.827705
Target:  5'- -cUCGUaGACGcGCUCGAGgGUGCgGCg -3'
miRNA:   3'- gcAGCAgCUGCaUGAGCUU-CAUGgCG- -5'
16265 3' -50.9 NC_004084.1 + 48784 0.69 0.827705
Target:  5'- uGUCGgacgagaugcccUCGGCGUugaucGCUCGAAG-ACgCGCa -3'
miRNA:   3'- gCAGC------------AGCUGCA-----UGAGCUUCaUG-GCG- -5'
16265 3' -50.9 NC_004084.1 + 49404 0.69 0.836687
Target:  5'- aGUCGUCGugGUcCUCGA---ACCa- -3'
miRNA:   3'- gCAGCAGCugCAuGAGCUucaUGGcg -5'
16265 3' -50.9 NC_004084.1 + 6259 0.69 0.836687
Target:  5'- -uUCGUCGACGUGgUCGgcGU-CCa- -3'
miRNA:   3'- gcAGCAGCUGCAUgAGCuuCAuGGcg -5'
16265 3' -50.9 NC_004084.1 + 30097 0.69 0.845454
Target:  5'- --aCGgCGGCGaGCUCGAGGUgcucacuacucGCCGCc -3'
miRNA:   3'- gcaGCaGCUGCaUGAGCUUCA-----------UGGCG- -5'
16265 3' -50.9 NC_004084.1 + 46302 0.69 0.845454
Target:  5'- aGUCGUCGACGUugACUCc--GU-UCGCg -3'
miRNA:   3'- gCAGCAGCUGCA--UGAGcuuCAuGGCG- -5'
16265 3' -50.9 NC_004084.1 + 16646 0.69 0.853151
Target:  5'- uCGUCGUCGACGUcgUCcggGAGGUccucgucGCCGg -3'
miRNA:   3'- -GCAGCAGCUGCAugAG---CUUCA-------UGGCg -5'
16265 3' -50.9 NC_004084.1 + 3176 0.69 0.853995
Target:  5'- aCGUCGUCGACGg---CGAGGa--CGUg -3'
miRNA:   3'- -GCAGCAGCUGCaugaGCUUCaugGCG- -5'
16265 3' -50.9 NC_004084.1 + 27790 0.69 0.853995
Target:  5'- gCGUCGUCG-CGaACUCGuAGU-CgGCg -3'
miRNA:   3'- -GCAGCAGCuGCaUGAGCuUCAuGgCG- -5'
16265 3' -50.9 NC_004084.1 + 5191 0.69 0.853995
Target:  5'- cCGcUCGUagaugacaCGACGgugcgACUCGAcGUGCUGCu -3'
miRNA:   3'- -GC-AGCA--------GCUGCa----UGAGCUuCAUGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.