miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16269 3' -59.6 NC_004084.1 + 52589 0.66 0.519373
Target:  5'- cGGcGGCGUgGUcCGGugGGUCGaGGCa -3'
miRNA:   3'- aCCuCCGCGaCA-GCUugCCGGCgUCG- -5'
16269 3' -59.6 NC_004084.1 + 33102 0.66 0.509203
Target:  5'- aGG-GGCGCga-CG-GCGGCCucuGCGGCu -3'
miRNA:   3'- aCCuCCGCGacaGCuUGCCGG---CGUCG- -5'
16269 3' -59.6 NC_004084.1 + 7360 0.66 0.499118
Target:  5'- aGGAGGCGCgGuUCGcuccGACGGugaucCCGCcuGCg -3'
miRNA:   3'- aCCUCCGCGaC-AGC----UUGCC-----GGCGu-CG- -5'
16269 3' -59.6 NC_004084.1 + 15762 0.66 0.499118
Target:  5'- gGGAGGaCGUcGUCGGACuGcGCCGCc-- -3'
miRNA:   3'- aCCUCC-GCGaCAGCUUG-C-CGGCGucg -5'
16269 3' -59.6 NC_004084.1 + 4046 0.66 0.489122
Target:  5'- aGGGGGCGgaGUUGA-CGGagaaGgGGCg -3'
miRNA:   3'- aCCUCCGCgaCAGCUuGCCgg--CgUCG- -5'
16269 3' -59.6 NC_004084.1 + 44051 0.66 0.479221
Target:  5'- gGGAGGUGCg--CGAAgauGCCGCguAGCa -3'
miRNA:   3'- aCCUCCGCGacaGCUUgc-CGGCG--UCG- -5'
16269 3' -59.6 NC_004084.1 + 43582 0.67 0.459722
Target:  5'- -cGAGGCGCggauccuccagUGggaucgCGAguACGGCCGCuGGCc -3'
miRNA:   3'- acCUCCGCG-----------ACa-----GCU--UGCCGGCG-UCG- -5'
16269 3' -59.6 NC_004084.1 + 39331 0.67 0.450131
Target:  5'- ---cGGUGCUGaUCGAcgucgacguagACGGCCGC-GCc -3'
miRNA:   3'- accuCCGCGAC-AGCU-----------UGCCGGCGuCG- -5'
16269 3' -59.6 NC_004084.1 + 35883 0.67 0.449178
Target:  5'- gGGAGGCcaguGCcgGUCGGACgucccgcuggaguGGCCGCGu- -3'
miRNA:   3'- aCCUCCG----CGa-CAGCUUG-------------CCGGCGUcg -5'
16269 3' -59.6 NC_004084.1 + 56559 0.67 0.440651
Target:  5'- aGGAGGCGaC-GUCGuccguCGcGCUGCAGg -3'
miRNA:   3'- aCCUCCGC-GaCAGCuu---GC-CGGCGUCg -5'
16269 3' -59.6 NC_004084.1 + 2723 0.67 0.440651
Target:  5'- gUGGAGGCG--GUCGAACcagaGCgGCAGa -3'
miRNA:   3'- -ACCUCCGCgaCAGCUUGc---CGgCGUCg -5'
16269 3' -59.6 NC_004084.1 + 53456 0.67 0.435018
Target:  5'- -cGAGGCGCUcuggagccacugcucGauuucguccUCGAGCGGCUGgAGCc -3'
miRNA:   3'- acCUCCGCGA---------------C---------AGCUUGCCGGCgUCG- -5'
16269 3' -59.6 NC_004084.1 + 23232 0.67 0.431286
Target:  5'- cGGAGGaGC--UCGAGCGGCC-CGGa -3'
miRNA:   3'- aCCUCCgCGacAGCUUGCCGGcGUCg -5'
16269 3' -59.6 NC_004084.1 + 57480 0.67 0.431286
Target:  5'- cGGAGuCGaacuUGUCGAGCcagaGGCCGUGGUg -3'
miRNA:   3'- aCCUCcGCg---ACAGCUUG----CCGGCGUCG- -5'
16269 3' -59.6 NC_004084.1 + 26687 0.67 0.412911
Target:  5'- aGGAGGCGacaucGUCGAuauCGG-CGUAGUc -3'
miRNA:   3'- aCCUCCGCga---CAGCUu--GCCgGCGUCG- -5'
16269 3' -59.6 NC_004084.1 + 54486 0.67 0.412911
Target:  5'- cGGcGGgGaugaUGUCGggUGcGCCGUAGUg -3'
miRNA:   3'- aCCuCCgCg---ACAGCuuGC-CGGCGUCG- -5'
16269 3' -59.6 NC_004084.1 + 55980 0.67 0.412911
Target:  5'- cGGAGGgGCUGaUCGccGAUGGCgaGCAucGCu -3'
miRNA:   3'- aCCUCCgCGAC-AGC--UUGCCGg-CGU--CG- -5'
16269 3' -59.6 NC_004084.1 + 30228 0.68 0.402121
Target:  5'- cGGAGGCGauguccgcggcgacGUCGAACaGGCCGaggacggacuauucCAGCc -3'
miRNA:   3'- aCCUCCGCga------------CAGCUUG-CCGGC--------------GUCG- -5'
16269 3' -59.6 NC_004084.1 + 38211 0.68 0.395028
Target:  5'- cGGccGCGCUGUCGuucgauGCGGCgacUGCGGa -3'
miRNA:   3'- aCCucCGCGACAGCu-----UGCCG---GCGUCg -5'
16269 3' -59.6 NC_004084.1 + 10473 0.68 0.386276
Target:  5'- aGGAcGGC-CUGaCGGACGGCCuCgAGCg -3'
miRNA:   3'- aCCU-CCGcGACaGCUUGCCGGcG-UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.