Results 21 - 29 of 29 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 9941 | 0.67 | 0.711329 |
|
Target: 5'- aGACGUgCGUCGGCgGGU-CGGaGuAGCc -3' miRNA: 3'- gCUGCA-GCAGCCGgUCAuGCCaC-UUG- -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 15100 | 0.67 | 0.721895 |
|
Target: 5'- --uCGUCGUCGGUguGaccguaGCGGUGGAa -3' miRNA: 3'- gcuGCAGCAGCCGguCa-----UGCCACUUg -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 54265 | 0.67 | 0.721895 |
|
Target: 5'- gCGACGUCaUCGGCC-GUcUGGUaAGCa -3' miRNA: 3'- -GCUGCAGcAGCCGGuCAuGCCAcUUG- -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 11657 | 0.67 | 0.732373 |
|
Target: 5'- uCGACGUCgGUCGGCgAcgacUACGGcgaGGACa -3' miRNA: 3'- -GCUGCAG-CAGCCGgUc---AUGCCa--CUUG- -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 4125 | 0.67 | 0.743786 |
|
Target: 5'- aCGACGUCGucuUCGGCCAGcagaaugcuuaccagACGGccGAugACg -3' miRNA: 3'- -GCUGCAGC---AGCCGGUCa--------------UGCCa-CU--UG- -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 38857 | 0.66 | 0.773195 |
|
Target: 5'- gGACGUCGUCcucgucgaGCCAGaguUGCGG-GAAg -3' miRNA: 3'- gCUGCAGCAGc-------CGGUC---AUGCCaCUUg -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 16915 | 0.66 | 0.773195 |
|
Target: 5'- aGGCGaUCGU-GGCCGgGUGCGGUucggcaucggcGGGCg -3' miRNA: 3'- gCUGC-AGCAgCCGGU-CAUGCCA-----------CUUG- -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 39787 | 0.66 | 0.783073 |
|
Target: 5'- gCGACGagGUCGGCCAacuCGGcGAc- -3' miRNA: 3'- -GCUGCagCAGCCGGUcauGCCaCUug -5' |
|||||||
| 16270 | 3' | -54.7 | NC_004084.1 | + | 55563 | 0.66 | 0.802357 |
|
Target: 5'- gCGACGaacUCGUCGGCCuGUuCGGc---- -3' miRNA: 3'- -GCUGC---AGCAGCCGGuCAuGCCacuug -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home