miRNA display CGI


Results 21 - 40 of 103 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16276 5' -50.5 NC_004084.1 + 39045 0.73 0.681343
Target:  5'- aGGUCgauGCGAucgGGACGUUGUCgAUCagcagGUCGCu -3'
miRNA:   3'- -CCAG---UGCU---UCUGCAGCAG-UAG-----CAGCG- -5'
16276 5' -50.5 NC_004084.1 + 45868 0.73 0.692263
Target:  5'- cGGUgaACGG-GACGUCGUCGUCGcUCa- -3'
miRNA:   3'- -CCAg-UGCUuCUGCAGCAGUAGC-AGcg -5'
16276 5' -50.5 NC_004084.1 + 14078 0.72 0.712842
Target:  5'- --cCGCGAccgacguAGACGUCGaugUCGUCGUgGCg -3'
miRNA:   3'- ccaGUGCU-------UCUGCAGC---AGUAGCAgCG- -5'
16276 5' -50.5 NC_004084.1 + 2566 0.72 0.713918
Target:  5'- --cCGCGAAGACGUCcG-CGUCGUUGa -3'
miRNA:   3'- ccaGUGCUUCUGCAG-CaGUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 1956 0.72 0.713918
Target:  5'- cGUCACgGAAGAccgagagcgcgcCGUCGagAUCGUCGUu -3'
miRNA:   3'- cCAGUG-CUUCU------------GCAGCagUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 25800 0.72 0.724629
Target:  5'- aGGUgGCGAGcGACGUCGagGUagacugacuccaUGUCGCa -3'
miRNA:   3'- -CCAgUGCUU-CUGCAGCagUA------------GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 39260 0.72 0.724629
Target:  5'- cGG-CGgGAagauGGugGUCGUCGaucgCGUCGCg -3'
miRNA:   3'- -CCaGUgCU----UCugCAGCAGUa---GCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 16127 0.72 0.736304
Target:  5'- cGagACGAAGACGgugauggacgaacugCG-CGUCGUCGCg -3'
miRNA:   3'- cCagUGCUUCUGCa--------------GCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 45732 0.72 0.745761
Target:  5'- cGGuUCACucGGucaACGUCGUCGUCGUCcCa -3'
miRNA:   3'- -CC-AGUGcuUC---UGCAGCAGUAGCAGcG- -5'
16276 5' -50.5 NC_004084.1 + 10374 0.71 0.765408
Target:  5'- cGUC-CGGAugaguucGACGUCGagcUCGUCGUCGUc -3'
miRNA:   3'- cCAGuGCUU-------CUGCAGC---AGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 30001 0.71 0.766429
Target:  5'- uGGUCGCuGguGACGaCGUCAgCGuUCGCa -3'
miRNA:   3'- -CCAGUG-CuuCUGCaGCAGUaGC-AGCG- -5'
16276 5' -50.5 NC_004084.1 + 31188 0.71 0.766429
Target:  5'- uGG-CugGGgaacAGcGCGUCGaCGUCGUCGCg -3'
miRNA:   3'- -CCaGugCU----UC-UGCAGCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 5552 0.71 0.77656
Target:  5'- cGGaaGCGAuaagucGACGUUGUCGagGUCGCc -3'
miRNA:   3'- -CCagUGCUu-----CUGCAGCAGUagCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 11718 0.71 0.786541
Target:  5'- cGUCGCGGuAGACGUCGcCGgcgacgugcUCGaaUCGCg -3'
miRNA:   3'- cCAGUGCU-UCUGCAGCaGU---------AGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 35335 0.71 0.786541
Target:  5'- aGGUCGCc--GACGUCcaCcUCGUCGCg -3'
miRNA:   3'- -CCAGUGcuuCUGCAGcaGuAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 28653 0.71 0.796359
Target:  5'- cGUCGCGAugcaGGACG--GUCAUCGucUCGCc -3'
miRNA:   3'- cCAGUGCU----UCUGCagCAGUAGC--AGCG- -5'
16276 5' -50.5 NC_004084.1 + 17227 0.71 0.796359
Target:  5'- cGUCGCG--GGCGUCGUguUCGUCccaGCu -3'
miRNA:   3'- cCAGUGCuuCUGCAGCAguAGCAG---CG- -5'
16276 5' -50.5 NC_004084.1 + 30037 0.7 0.806005
Target:  5'- aGGUCucGCGggGGCcgcUCG-CGUCGUUGUg -3'
miRNA:   3'- -CCAG--UGCuuCUGc--AGCaGUAGCAGCG- -5'
16276 5' -50.5 NC_004084.1 + 50595 0.7 0.815467
Target:  5'- cGGaUCugGGAGcgugccuccaGCGUCGagGUCGUCGa -3'
miRNA:   3'- -CC-AGugCUUC----------UGCAGCagUAGCAGCg -5'
16276 5' -50.5 NC_004084.1 + 48386 0.7 0.815467
Target:  5'- aGGUCAcCGucGACG-CGgCAUCGUgGCc -3'
miRNA:   3'- -CCAGU-GCuuCUGCaGCaGUAGCAgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.