miRNA display CGI


Results 1 - 20 of 30 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16284 3' -52.9 NC_004084.1 + 56814 0.66 0.87037
Target:  5'- aGUUcaUCGAGCAgaGCUcccagccggGCGACGUCGu -3'
miRNA:   3'- cCAG--AGCUUGUggCGAa--------CGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 30598 0.66 0.87037
Target:  5'- -cUCgCGGACGCCGCgguCGAUGUCc -3'
miRNA:   3'- ccAGaGCUUGUGGCGaacGCUGCAGu -5'
16284 3' -52.9 NC_004084.1 + 363 0.66 0.862303
Target:  5'- -cUCUCGAAacuguGCCGCgagcccgGgGACGUCGc -3'
miRNA:   3'- ccAGAGCUUg----UGGCGaa-----CgCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 18316 0.66 0.862303
Target:  5'- aGGaCUCGAA-GCCGCUgGCGugGg-- -3'
miRNA:   3'- -CCaGAGCUUgUGGCGAaCGCugCagu -5'
16284 3' -52.9 NC_004084.1 + 52471 0.66 0.862303
Target:  5'- ---gUCGAugGCCGaggcgaagcGCGACGUCAu -3'
miRNA:   3'- ccagAGCUugUGGCgaa------CGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 2287 0.66 0.862303
Target:  5'- uGGUCgacgcCGAcgACACUGCggcgcaCGACGUCGa -3'
miRNA:   3'- -CCAGa----GCU--UGUGGCGaac---GCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 27278 0.66 0.856513
Target:  5'- cGGUCcgaaccgcugacgaUCGcGGCGCCGCUguucaucauccugGCGACGUa- -3'
miRNA:   3'- -CCAG--------------AGC-UUGUGGCGAa------------CGCUGCAgu -5'
16284 3' -52.9 NC_004084.1 + 21684 0.66 0.853995
Target:  5'- aGGUUgcguugCGAGCACaGCUgacgucgGCGACcGUCGa -3'
miRNA:   3'- -CCAGa-----GCUUGUGgCGAa------CGCUG-CAGU- -5'
16284 3' -52.9 NC_004084.1 + 45841 0.66 0.845454
Target:  5'- cGUcCUCGAuCAUCGCUUGCc-CGUCu -3'
miRNA:   3'- cCA-GAGCUuGUGGCGAACGcuGCAGu -5'
16284 3' -52.9 NC_004084.1 + 56472 0.66 0.845454
Target:  5'- cGGUCUucCGuGACGCUGCgaaggagaUGCGGCGUg- -3'
miRNA:   3'- -CCAGA--GC-UUGUGGCGa-------ACGCUGCAgu -5'
16284 3' -52.9 NC_004084.1 + 38433 0.67 0.827705
Target:  5'- --aCUCGAGCgaaCGC--GCGACGUCGa -3'
miRNA:   3'- ccaGAGCUUGug-GCGaaCGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 8560 0.67 0.818515
Target:  5'- aGGaCUCGccgGAUcUCGCUcGCGACGUCGa -3'
miRNA:   3'- -CCaGAGC---UUGuGGCGAaCGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 5686 0.67 0.799557
Target:  5'- aGGUCgUCGAGguCCGCUggGUugaguucgagGACGUCGc -3'
miRNA:   3'- -CCAG-AGCUUguGGCGAa-CG----------CUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 9413 0.67 0.799557
Target:  5'- cGGUCacgaUCGAcacGgACCGCgcgaugggccGCGACGUCGa -3'
miRNA:   3'- -CCAG----AGCU---UgUGGCGaa--------CGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 45651 0.68 0.786851
Target:  5'- cGUCUCGGAUGCCGacaacgacgagacgGuCGGCGUCGa -3'
miRNA:   3'- cCAGAGCUUGUGGCgaa-----------C-GCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 38646 0.68 0.777893
Target:  5'- uGGUCagcagUGAGCACCGuCUgucagaccugcgGCGAgGUCAg -3'
miRNA:   3'- -CCAGa----GCUUGUGGC-GAa-----------CGCUgCAGU- -5'
16284 3' -52.9 NC_004084.1 + 43347 0.68 0.769827
Target:  5'- cGGUCUCGAACGCCGagu-CGAacaUCAc -3'
miRNA:   3'- -CCAGAGCUUGUGGCgaacGCUgc-AGU- -5'
16284 3' -52.9 NC_004084.1 + 35813 0.68 0.759616
Target:  5'- cGGUCaUGAGCucaccACCGUcucgucgGCGACGUCGu -3'
miRNA:   3'- -CCAGaGCUUG-----UGGCGaa-----CGCUGCAGU- -5'
16284 3' -52.9 NC_004084.1 + 54230 0.68 0.756527
Target:  5'- cGGaUCUCGAcgucggagcgaucaGCGCCGUcgGCGAgGUUg -3'
miRNA:   3'- -CC-AGAGCU--------------UGUGGCGaaCGCUgCAGu -5'
16284 3' -52.9 NC_004084.1 + 30516 0.68 0.749275
Target:  5'- cGGUCcgCGAGCugCGCgagcGCGAaugacgcuguuCGUCGa -3'
miRNA:   3'- -CCAGa-GCUUGugGCGaa--CGCU-----------GCAGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.