Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16284 | 3' | -52.9 | NC_004084.1 | + | 56814 | 0.66 | 0.87037 |
Target: 5'- aGUUcaUCGAGCAgaGCUcccagccggGCGACGUCGu -3' miRNA: 3'- cCAG--AGCUUGUggCGAa--------CGCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 30598 | 0.66 | 0.87037 |
Target: 5'- -cUCgCGGACGCCGCgguCGAUGUCc -3' miRNA: 3'- ccAGaGCUUGUGGCGaacGCUGCAGu -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 363 | 0.66 | 0.862303 |
Target: 5'- -cUCUCGAAacuguGCCGCgagcccgGgGACGUCGc -3' miRNA: 3'- ccAGAGCUUg----UGGCGaa-----CgCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 18316 | 0.66 | 0.862303 |
Target: 5'- aGGaCUCGAA-GCCGCUgGCGugGg-- -3' miRNA: 3'- -CCaGAGCUUgUGGCGAaCGCugCagu -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 52471 | 0.66 | 0.862303 |
Target: 5'- ---gUCGAugGCCGaggcgaagcGCGACGUCAu -3' miRNA: 3'- ccagAGCUugUGGCgaa------CGCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 2287 | 0.66 | 0.862303 |
Target: 5'- uGGUCgacgcCGAcgACACUGCggcgcaCGACGUCGa -3' miRNA: 3'- -CCAGa----GCU--UGUGGCGaac---GCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 27278 | 0.66 | 0.856513 |
Target: 5'- cGGUCcgaaccgcugacgaUCGcGGCGCCGCUguucaucauccugGCGACGUa- -3' miRNA: 3'- -CCAG--------------AGC-UUGUGGCGAa------------CGCUGCAgu -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 21684 | 0.66 | 0.853995 |
Target: 5'- aGGUUgcguugCGAGCACaGCUgacgucgGCGACcGUCGa -3' miRNA: 3'- -CCAGa-----GCUUGUGgCGAa------CGCUG-CAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 45841 | 0.66 | 0.845454 |
Target: 5'- cGUcCUCGAuCAUCGCUUGCc-CGUCu -3' miRNA: 3'- cCA-GAGCUuGUGGCGAACGcuGCAGu -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 56472 | 0.66 | 0.845454 |
Target: 5'- cGGUCUucCGuGACGCUGCgaaggagaUGCGGCGUg- -3' miRNA: 3'- -CCAGA--GC-UUGUGGCGa-------ACGCUGCAgu -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 38433 | 0.67 | 0.827705 |
Target: 5'- --aCUCGAGCgaaCGC--GCGACGUCGa -3' miRNA: 3'- ccaGAGCUUGug-GCGaaCGCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 8560 | 0.67 | 0.818515 |
Target: 5'- aGGaCUCGccgGAUcUCGCUcGCGACGUCGa -3' miRNA: 3'- -CCaGAGC---UUGuGGCGAaCGCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 5686 | 0.67 | 0.799557 |
Target: 5'- aGGUCgUCGAGguCCGCUggGUugaguucgagGACGUCGc -3' miRNA: 3'- -CCAG-AGCUUguGGCGAa-CG----------CUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 9413 | 0.67 | 0.799557 |
Target: 5'- cGGUCacgaUCGAcacGgACCGCgcgaugggccGCGACGUCGa -3' miRNA: 3'- -CCAG----AGCU---UgUGGCGaa--------CGCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 45651 | 0.68 | 0.786851 |
Target: 5'- cGUCUCGGAUGCCGacaacgacgagacgGuCGGCGUCGa -3' miRNA: 3'- cCAGAGCUUGUGGCgaa-----------C-GCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 38646 | 0.68 | 0.777893 |
Target: 5'- uGGUCagcagUGAGCACCGuCUgucagaccugcgGCGAgGUCAg -3' miRNA: 3'- -CCAGa----GCUUGUGGC-GAa-----------CGCUgCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 43347 | 0.68 | 0.769827 |
Target: 5'- cGGUCUCGAACGCCGagu-CGAacaUCAc -3' miRNA: 3'- -CCAGAGCUUGUGGCgaacGCUgc-AGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 35813 | 0.68 | 0.759616 |
Target: 5'- cGGUCaUGAGCucaccACCGUcucgucgGCGACGUCGu -3' miRNA: 3'- -CCAGaGCUUG-----UGGCGaa-----CGCUGCAGU- -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 54230 | 0.68 | 0.756527 |
Target: 5'- cGGaUCUCGAcgucggagcgaucaGCGCCGUcgGCGAgGUUg -3' miRNA: 3'- -CC-AGAGCU--------------UGUGGCGaaCGCUgCAGu -5' |
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16284 | 3' | -52.9 | NC_004084.1 | + | 30516 | 0.68 | 0.749275 |
Target: 5'- cGGUCcgCGAGCugCGCgagcGCGAaugacgcuguuCGUCGa -3' miRNA: 3'- -CCAGa-GCUUGugGCGaa--CGCU-----------GCAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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