miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16305 5' -56.6 NC_004084.1 + 30150 1.09 0.000874
Target:  5'- gUCCACGAGUCGAAGCCGCGACGGUGAa -3'
miRNA:   3'- -AGGUGCUCAGCUUCGGCGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 38711 0.72 0.357104
Target:  5'- aCCGuCGuAGUCGAAGUCGUGGgagugcuCGGUGAa -3'
miRNA:   3'- aGGU-GC-UCAGCUUCGGCGCU-------GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 24336 0.71 0.383493
Target:  5'- cUUCACGAggcgucuaacGUCGAAGgcaaCCGCGGuCGGUGAu -3'
miRNA:   3'- -AGGUGCU----------CAGCUUC----GGCGCU-GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 15266 0.71 0.416638
Target:  5'- uUCCAgGAGgaggCGGcggcaauauccggcGGCUgGCGACGGUGAu -3'
miRNA:   3'- -AGGUgCUCa---GCU--------------UCGG-CGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 50117 0.71 0.419402
Target:  5'- aCUuCGAGUCGAGGCCcGCGAucgucCGGaUGAc -3'
miRNA:   3'- aGGuGCUCAGCUUCGG-CGCU-----GCC-ACU- -5'
16305 5' -56.6 NC_004084.1 + 16898 0.71 0.420325
Target:  5'- uUCCGCGAGUCGuucccaggcgaucguGGCCGgGuGCGGUu- -3'
miRNA:   3'- -AGGUGCUCAGCu--------------UCGGCgC-UGCCAcu -5'
16305 5' -56.6 NC_004084.1 + 2406 0.7 0.456306
Target:  5'- aCgACGAGUCGAGGgcaaaguacgcgaUCGUGgGCGGUGAa -3'
miRNA:   3'- aGgUGCUCAGCUUC-------------GGCGC-UGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 19806 0.7 0.457275
Target:  5'- gCCGCgggGAGUCGuu-CCGCGACGGUc- -3'
miRNA:   3'- aGGUG---CUCAGCuucGGCGCUGCCAcu -5'
16305 5' -56.6 NC_004084.1 + 22589 0.69 0.476887
Target:  5'- aCCACGA--CGucGCCGacgaGACGGUGGu -3'
miRNA:   3'- aGGUGCUcaGCuuCGGCg---CUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 29477 0.69 0.476887
Target:  5'- -aCGCGc-UCGAGGgUGCGGCGGUGGu -3'
miRNA:   3'- agGUGCucAGCUUCgGCGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 11186 0.69 0.496906
Target:  5'- aUCGCG-GUCGAAGCaGCGugGGa-- -3'
miRNA:   3'- aGGUGCuCAGCUUCGgCGCugCCacu -5'
16305 5' -56.6 NC_004084.1 + 680 0.69 0.507057
Target:  5'- gCCACGAG-C-AGGCCGCG--GGUGAg -3'
miRNA:   3'- aGGUGCUCaGcUUCGGCGCugCCACU- -5'
16305 5' -56.6 NC_004084.1 + 51444 0.69 0.517295
Target:  5'- aUCUACGuuggCGAgGGCCGCGGCGGcUGu -3'
miRNA:   3'- -AGGUGCuca-GCU-UCGGCGCUGCC-ACu -5'
16305 5' -56.6 NC_004084.1 + 50612 0.69 0.517295
Target:  5'- cUCCA-GcGUCGAGGUCGuCGACGGUcaGAg -3'
miRNA:   3'- -AGGUgCuCAGCUUCGGC-GCUGCCA--CU- -5'
16305 5' -56.6 NC_004084.1 + 11829 0.69 0.527615
Target:  5'- aCCACGAgGUCGAAucGCC-UGACGGcGAu -3'
miRNA:   3'- aGGUGCU-CAGCUU--CGGcGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 52575 0.69 0.527615
Target:  5'- aUCCACGAGgacugCGgcGgCGUGGucCGGUGGg -3'
miRNA:   3'- -AGGUGCUCa----GCuuCgGCGCU--GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 53239 0.68 0.548475
Target:  5'- aUCUACGAG-CGGgcGGUCGuCGACGGcGAc -3'
miRNA:   3'- -AGGUGCUCaGCU--UCGGC-GCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 33084 0.68 0.559003
Target:  5'- gCCACGAGcccugCGAgaagGGgCGCGACGGcGGc -3'
miRNA:   3'- aGGUGCUCa----GCU----UCgGCGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 42219 0.68 0.559003
Target:  5'- uUCaACGAGUCGAAGCgCcUGACGGcgGAc -3'
miRNA:   3'- -AGgUGCUCAGCUUCG-GcGCUGCCa-CU- -5'
16305 5' -56.6 NC_004084.1 + 1559 0.68 0.569586
Target:  5'- gCCGuCGAGcCGGAGcCCGCGaACGGg-- -3'
miRNA:   3'- aGGU-GCUCaGCUUC-GGCGC-UGCCacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.