miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16305 5' -56.6 NC_004084.1 + 680 0.69 0.507057
Target:  5'- gCCACGAG-C-AGGCCGCG--GGUGAg -3'
miRNA:   3'- aGGUGCUCaGcUUCGGCGCugCCACU- -5'
16305 5' -56.6 NC_004084.1 + 1559 0.68 0.569586
Target:  5'- gCCGuCGAGcCGGAGcCCGCGaACGGg-- -3'
miRNA:   3'- aGGU-GCUCaGCUUC-GGCGC-UGCCacu -5'
16305 5' -56.6 NC_004084.1 + 2037 0.66 0.687397
Target:  5'- cUCCGagagguCGAuGUCGAuGCCGU-ACGGUGGa -3'
miRNA:   3'- -AGGU------GCU-CAGCUuCGGCGcUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 2406 0.7 0.456306
Target:  5'- aCgACGAGUCGAGGgcaaaguacgcgaUCGUGgGCGGUGAa -3'
miRNA:   3'- aGgUGCUCAGCUUC-------------GGCGC-UGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 3115 0.68 0.590892
Target:  5'- aUCCACGAGUaCGggGCUGgGAuCGa--- -3'
miRNA:   3'- -AGGUGCUCA-GCuuCGGCgCU-GCcacu -5'
16305 5' -56.6 NC_004084.1 + 5505 0.66 0.676745
Target:  5'- gUCgACGAGUCGuu-CCuaGugGGUGGc -3'
miRNA:   3'- -AGgUGCUCAGCuucGGcgCugCCACU- -5'
16305 5' -56.6 NC_004084.1 + 7357 0.67 0.623078
Target:  5'- cCCAgGAGgcgCGGuucGCUcCGACGGUGAu -3'
miRNA:   3'- aGGUgCUCa--GCUu--CGGcGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 7464 0.66 0.676745
Target:  5'- aCgGCGAcUCG-AGCgGCGACGGcGAa -3'
miRNA:   3'- aGgUGCUcAGCuUCGgCGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 11186 0.69 0.496906
Target:  5'- aUCGCG-GUCGAAGCaGCGugGGa-- -3'
miRNA:   3'- aGGUGCuCAGCUUCGgCGCugCCacu -5'
16305 5' -56.6 NC_004084.1 + 11829 0.69 0.527615
Target:  5'- aCCACGAgGUCGAAucGCC-UGACGGcGAu -3'
miRNA:   3'- aGGUGCU-CAGCUU--CGGcGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 12428 0.67 0.633833
Target:  5'- aCCGCGucUCGAAcGCCGUGACGa--- -3'
miRNA:   3'- aGGUGCucAGCUU-CGGCGCUGCcacu -5'
16305 5' -56.6 NC_004084.1 + 15266 0.71 0.416638
Target:  5'- uUCCAgGAGgaggCGGcggcaauauccggcGGCUgGCGACGGUGAu -3'
miRNA:   3'- -AGGUgCUCa---GCU--------------UCGG-CGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 16487 0.66 0.696941
Target:  5'- gUCCGCugcaAGUgCGAAgggaauccugacuGCCGCGAcCGGUGGc -3'
miRNA:   3'- -AGGUGc---UCA-GCUU-------------CGGCGCU-GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 16898 0.71 0.420325
Target:  5'- uUCCGCGAGUCGuucccaggcgaucguGGCCGgGuGCGGUu- -3'
miRNA:   3'- -AGGUGCUCAGCu--------------UCGGCgC-UGCCAcu -5'
16305 5' -56.6 NC_004084.1 + 19806 0.7 0.457275
Target:  5'- gCCGCgggGAGUCGuu-CCGCGACGGUc- -3'
miRNA:   3'- aGGUG---CUCAGCuucGGCGCUGCCAcu -5'
16305 5' -56.6 NC_004084.1 + 21795 0.67 0.643512
Target:  5'- aUCGCGAGcCGAuGCaccucaacgucagCGuCGACGGUGAg -3'
miRNA:   3'- aGGUGCUCaGCUuCG-------------GC-GCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 22589 0.69 0.476887
Target:  5'- aCCACGA--CGucGCCGacgaGACGGUGGu -3'
miRNA:   3'- aGGUGCUcaGCuuCGGCg---CUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 24336 0.71 0.383493
Target:  5'- cUUCACGAggcgucuaacGUCGAAGgcaaCCGCGGuCGGUGAu -3'
miRNA:   3'- -AGGUGCU----------CAGCUUC----GGCGCU-GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 29410 0.66 0.666053
Target:  5'- cUCCugGGGcgucgCGGuuGCCGuCGACGGcGAg -3'
miRNA:   3'- -AGGugCUCa----GCUu-CGGC-GCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 29477 0.69 0.476887
Target:  5'- -aCGCGc-UCGAGGgUGCGGCGGUGGu -3'
miRNA:   3'- agGUGCucAGCUUCgGCGCUGCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.