miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16305 5' -56.6 NC_004084.1 + 16487 0.66 0.696941
Target:  5'- gUCCGCugcaAGUgCGAAgggaauccugacuGCCGCGAcCGGUGGc -3'
miRNA:   3'- -AGGUGc---UCA-GCUU-------------CGGCGCU-GCCACU- -5'
16305 5' -56.6 NC_004084.1 + 3115 0.68 0.590892
Target:  5'- aUCCACGAGUaCGggGCUGgGAuCGa--- -3'
miRNA:   3'- -AGGUGCUCA-GCuuCGGCgCU-GCcacu -5'
16305 5' -56.6 NC_004084.1 + 45461 0.67 0.623078
Target:  5'- cCCGCGAGaUCGAAGCCGagccucguuCGGCGucGAu -3'
miRNA:   3'- aGGUGCUC-AGCUUCGGC---------GCUGCcaCU- -5'
16305 5' -56.6 NC_004084.1 + 12428 0.67 0.633833
Target:  5'- aCCGCGucUCGAAcGCCGUGACGa--- -3'
miRNA:   3'- aGGUGCucAGCUU-CGGCGCUGCcacu -5'
16305 5' -56.6 NC_004084.1 + 21795 0.67 0.643512
Target:  5'- aUCGCGAGcCGAuGCaccucaacgucagCGuCGACGGUGAg -3'
miRNA:   3'- aGGUGCUCaGCUuCG-------------GC-GCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 5505 0.66 0.676745
Target:  5'- gUCgACGAGUCGuu-CCuaGugGGUGGc -3'
miRNA:   3'- -AGgUGCUCAGCuucGGcgCugCCACU- -5'
16305 5' -56.6 NC_004084.1 + 7464 0.66 0.676745
Target:  5'- aCgGCGAcUCG-AGCgGCGACGGcGAa -3'
miRNA:   3'- aGgUGCUcAGCuUCGgCGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 50617 0.66 0.676745
Target:  5'- -gUACGGGUucgcCGAcGCUGCGGCGGgGAa -3'
miRNA:   3'- agGUGCUCA----GCUuCGGCGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 39630 0.66 0.687397
Target:  5'- cUCgACGAGUCGAucguaCGCGACGccGAg -3'
miRNA:   3'- -AGgUGCUCAGCUucg--GCGCUGCcaCU- -5'
16305 5' -56.6 NC_004084.1 + 57242 0.68 0.580218
Target:  5'- gUCCACGAccgcGUCGgcGaugaCGCGAaGGUGGu -3'
miRNA:   3'- -AGGUGCU----CAGCuuCg---GCGCUgCCACU- -5'
16305 5' -56.6 NC_004084.1 + 42219 0.68 0.559003
Target:  5'- uUCaACGAGUCGAAGCgCcUGACGGcgGAc -3'
miRNA:   3'- -AGgUGCUCAGCUUCG-GcGCUGCCa-CU- -5'
16305 5' -56.6 NC_004084.1 + 53239 0.68 0.548475
Target:  5'- aUCUACGAG-CGGgcGGUCGuCGACGGcGAc -3'
miRNA:   3'- -AGGUGCUCaGCU--UCGGC-GCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 2406 0.7 0.456306
Target:  5'- aCgACGAGUCGAGGgcaaaguacgcgaUCGUGgGCGGUGAa -3'
miRNA:   3'- aGgUGCUCAGCUUC-------------GGCGC-UGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 22589 0.69 0.476887
Target:  5'- aCCACGA--CGucGCCGacgaGACGGUGGu -3'
miRNA:   3'- aGGUGCUcaGCuuCGGCg---CUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 29477 0.69 0.476887
Target:  5'- -aCGCGc-UCGAGGgUGCGGCGGUGGu -3'
miRNA:   3'- agGUGCucAGCUUCgGCGCUGCCACU- -5'
16305 5' -56.6 NC_004084.1 + 11186 0.69 0.496906
Target:  5'- aUCGCG-GUCGAAGCaGCGugGGa-- -3'
miRNA:   3'- aGGUGCuCAGCUUCGgCGCugCCacu -5'
16305 5' -56.6 NC_004084.1 + 680 0.69 0.507057
Target:  5'- gCCACGAG-C-AGGCCGCG--GGUGAg -3'
miRNA:   3'- aGGUGCUCaGcUUCGGCGCugCCACU- -5'
16305 5' -56.6 NC_004084.1 + 51444 0.69 0.517295
Target:  5'- aUCUACGuuggCGAgGGCCGCGGCGGcUGu -3'
miRNA:   3'- -AGGUGCuca-GCU-UCGGCGCUGCC-ACu -5'
16305 5' -56.6 NC_004084.1 + 11829 0.69 0.527615
Target:  5'- aCCACGAgGUCGAAucGCC-UGACGGcGAu -3'
miRNA:   3'- aGGUGCU-CAGCUU--CGGcGCUGCCaCU- -5'
16305 5' -56.6 NC_004084.1 + 52575 0.69 0.527615
Target:  5'- aUCCACGAGgacugCGgcGgCGUGGucCGGUGGg -3'
miRNA:   3'- -AGGUGCUCa----GCuuCgGCGCU--GCCACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.