miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16309 3' -53.8 NC_004084.1 + 29192 1.08 0.002033
Target:  5'- aGUACUCGCCCGCGAACAACGUCGACGc -3'
miRNA:   3'- -CAUGAGCGGGCGCUUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 14956 0.84 0.090259
Target:  5'- aUGCUCGUCCG-GGACAACGUUGGCGg -3'
miRNA:   3'- cAUGAGCGGGCgCUUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 55314 0.79 0.206251
Target:  5'- cGUACUCguggaugaggaGCCCGCcgGAACGcACGUCGACGa -3'
miRNA:   3'- -CAUGAG-----------CGGGCG--CUUGU-UGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 8562 0.78 0.223189
Target:  5'- -gACUCGCCggaucuCGCucGCGACGUCGACGa -3'
miRNA:   3'- caUGAGCGG------GCGcuUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 47261 0.78 0.241295
Target:  5'- -gGCUCGCCgGCGccuacuACGAgGUCGACGa -3'
miRNA:   3'- caUGAGCGGgCGCu-----UGUUgCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 2096 0.77 0.254035
Target:  5'- -cGCUCGCCUGCGAAUccuCGUCGAg- -3'
miRNA:   3'- caUGAGCGGGCGCUUGuu-GCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 47880 0.76 0.310546
Target:  5'- cUACUCGUCCGCuGGcucgGCAACG-CGACGg -3'
miRNA:   3'- cAUGAGCGGGCG-CU----UGUUGCaGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 30075 0.76 0.318247
Target:  5'- cUACUCGUCCGCGAGaagaagGACGgCGGCGa -3'
miRNA:   3'- cAUGAGCGGGCGCUUg-----UUGCaGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 51337 0.75 0.32609
Target:  5'- ----gCGCCCGCGAGaucuuCGUCGACGg -3'
miRNA:   3'- caugaGCGGGCGCUUguu--GCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 7600 0.74 0.367436
Target:  5'- uGUGCcggCGCCCGCGAACGG-GUCcagGACGa -3'
miRNA:   3'- -CAUGa--GCGGGCGCUUGUUgCAG---CUGC- -5'
16309 3' -53.8 NC_004084.1 + 1012 0.74 0.376127
Target:  5'- -aGCUCGCCgGCGA----CGUCGACGc -3'
miRNA:   3'- caUGAGCGGgCGCUuguuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 28911 0.74 0.384955
Target:  5'- -aGCgggugUGCCCGaGAGCGACGUCGGCc -3'
miRNA:   3'- caUGa----GCGGGCgCUUGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 29189 0.74 0.384955
Target:  5'- -aACUCGCCCuGCu--CGGCGUCGAUGu -3'
miRNA:   3'- caUGAGCGGG-CGcuuGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 41753 0.74 0.391216
Target:  5'- -gACgaCGCCgGCGAcgaggaccucccggACGACGUCGACGa -3'
miRNA:   3'- caUGa-GCGGgCGCU--------------UGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 12960 0.74 0.393016
Target:  5'- -gGCUCGgcuucgaUCCGCGGGCGGCGUCaGACa -3'
miRNA:   3'- caUGAGC-------GGGCGCUUGUUGCAG-CUGc -5'
16309 3' -53.8 NC_004084.1 + 32426 0.73 0.421607
Target:  5'- -aGCUCGCacucgUCGCGAACGAgGUCGAgGu -3'
miRNA:   3'- caUGAGCG-----GGCGCUUGUUgCAGCUgC- -5'
16309 3' -53.8 NC_004084.1 + 11700 0.73 0.440704
Target:  5'- uGUGCUCGCCCgaccacucgucGCGGuaGACGUCGcCGg -3'
miRNA:   3'- -CAUGAGCGGG-----------CGCUugUUGCAGCuGC- -5'
16309 3' -53.8 NC_004084.1 + 18835 0.73 0.450435
Target:  5'- -aGCgCGCCCG-GGACcuCGUCGACGa -3'
miRNA:   3'- caUGaGCGGGCgCUUGuuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 54112 0.73 0.460283
Target:  5'- -gACgaCGCCCGCGAucaccggcGgGACGUCGugGa -3'
miRNA:   3'- caUGa-GCGGGCGCU--------UgUUGCAGCugC- -5'
16309 3' -53.8 NC_004084.1 + 30707 0.72 0.470244
Target:  5'- -gGCUCcucaCCCGgGAACAGCGUCG-CGu -3'
miRNA:   3'- caUGAGc---GGGCgCUUGUUGCAGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.