miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16309 3' -53.8 NC_004084.1 + 1012 0.74 0.376127
Target:  5'- -aGCUCGCCgGCGA----CGUCGACGc -3'
miRNA:   3'- caUGAGCGGgCGCUuguuGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 1566 0.66 0.843497
Target:  5'- -aGCcggaGCCCGCGAacggguccaggACGACGUCGccCGg -3'
miRNA:   3'- caUGag--CGGGCGCU-----------UGUUGCAGCu-GC- -5'
16309 3' -53.8 NC_004084.1 + 1652 0.69 0.644789
Target:  5'- aGUACUCGCUCGUcaucaugggcucgucGGGCGACcugaUCGACGc -3'
miRNA:   3'- -CAUGAGCGGGCG---------------CUUGUUGc---AGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 2096 0.77 0.254035
Target:  5'- -cGCUCGCCUGCGAAUccuCGUCGAg- -3'
miRNA:   3'- caUGAGCGGGCGCUUGuu-GCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 2284 0.67 0.79486
Target:  5'- -gGCUgGUcgacgccgacgacaCUGCGGcgcACGACGUCGACGa -3'
miRNA:   3'- caUGAgCG--------------GGCGCU---UGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 2433 0.66 0.83475
Target:  5'- aUGCUCGCCaucgGCGAuCAgccccuccGCGUCGcCGu -3'
miRNA:   3'- cAUGAGCGGg---CGCUuGU--------UGCAGCuGC- -5'
16309 3' -53.8 NC_004084.1 + 3865 0.69 0.651351
Target:  5'- -aGCUCGCCCucgGUGAuACAGCGcCgGACGa -3'
miRNA:   3'- caUGAGCGGG---CGCU-UGUUGCaG-CUGC- -5'
16309 3' -53.8 NC_004084.1 + 4267 0.72 0.497668
Target:  5'- --uCUCGCCCuucgacGCGAACGGCGUcaggugcuggaagcCGACGg -3'
miRNA:   3'- cauGAGCGGG------CGCUUGUUGCA--------------GCUGC- -5'
16309 3' -53.8 NC_004084.1 + 5340 0.68 0.737346
Target:  5'- -cACgUCGCCgaGCGGGCGGCGagGACu -3'
miRNA:   3'- caUG-AGCGGg-CGCUUGUUGCagCUGc -5'
16309 3' -53.8 NC_004084.1 + 5644 0.67 0.765141
Target:  5'- -cACUCgagGCUgGCGAGCGGauccagaaagccacCGUCGACGa -3'
miRNA:   3'- caUGAG---CGGgCGCUUGUU--------------GCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 6483 0.66 0.843497
Target:  5'- --cCUCGCCCGgcUGAGCGAacgUGUCGAa- -3'
miRNA:   3'- cauGAGCGGGC--GCUUGUU---GCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 7001 0.68 0.737346
Target:  5'- cGUG-UCGCCCuCGAaggccucgACGGCGUCGGCc -3'
miRNA:   3'- -CAUgAGCGGGcGCU--------UGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 7056 0.66 0.807285
Target:  5'- -aACUCGUcuuggCCGCGAucCAGCGguUCGugGa -3'
miRNA:   3'- caUGAGCG-----GGCGCUu-GUUGC--AGCugC- -5'
16309 3' -53.8 NC_004084.1 + 7600 0.74 0.367436
Target:  5'- uGUGCcggCGCCCGCGAACGG-GUCcagGACGa -3'
miRNA:   3'- -CAUGa--GCGGGCGCUUGUUgCAG---CUGC- -5'
16309 3' -53.8 NC_004084.1 + 7791 0.69 0.662273
Target:  5'- gGUuCUUcCCCGCc-GCAGCGUCGGCGa -3'
miRNA:   3'- -CAuGAGcGGGCGcuUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 8562 0.78 0.223189
Target:  5'- -gACUCGCCggaucuCGCucGCGACGUCGACGa -3'
miRNA:   3'- caUGAGCGG------GCGcuUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 8868 0.69 0.638223
Target:  5'- aGUACgUCGacgacggaccaaCCGCuGACAGCGUCGACu -3'
miRNA:   3'- -CAUG-AGCg-----------GGCGcUUGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 9083 0.68 0.69483
Target:  5'- ---aUCGCCgCGguacgccgacCGGGCGAUGUCGACGa -3'
miRNA:   3'- caugAGCGG-GC----------GCUUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 9426 0.67 0.78805
Target:  5'- -cACggaCCgCGCGAugggccGCGACGUCGACGa -3'
miRNA:   3'- caUGagcGG-GCGCU------UGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 9988 0.7 0.585794
Target:  5'- cGUACUgGCC----GACGACGUCGACGa -3'
miRNA:   3'- -CAUGAgCGGgcgcUUGUUGCAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.