miRNA display CGI


Results 1 - 20 of 118 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16309 3' -53.8 NC_004084.1 + 57726 0.7 0.607588
Target:  5'- aGUGCgUGCaCCGCucGAgGACGUCGACGa -3'
miRNA:   3'- -CAUGaGCG-GGCGc-UUgUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 56258 0.71 0.521581
Target:  5'- cGUGCuggugUCGCCUaCGAguACGACGUCGACc -3'
miRNA:   3'- -CAUG-----AGCGGGcGCU--UGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 20843 0.71 0.532117
Target:  5'- -aACUCGCUCGcCGAGgGuggcACGUCGACc -3'
miRNA:   3'- caUGAGCGGGC-GCUUgU----UGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 16402 0.71 0.564153
Target:  5'- --cCUCGCUCGCGAcggccacucgaGCAaagacgGCGUCGAUGu -3'
miRNA:   3'- cauGAGCGGGCGCU-----------UGU------UGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 43676 0.71 0.564153
Target:  5'- -cGCgccgagUGCCUGCGAcggACGggcGCGUCGACGa -3'
miRNA:   3'- caUGa-----GCGGGCGCU---UGU---UGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 52845 0.7 0.585794
Target:  5'- -gGCguucggCGCUgGCGAccucgACAACGUCGACu -3'
miRNA:   3'- caUGa-----GCGGgCGCU-----UGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 56196 0.7 0.585794
Target:  5'- -cGCUgGCCgaaGCGAGCGGCGagGACa -3'
miRNA:   3'- caUGAgCGGg--CGCUUGUUGCagCUGc -5'
16309 3' -53.8 NC_004084.1 + 9988 0.7 0.585794
Target:  5'- cGUACUgGCC----GACGACGUCGACGa -3'
miRNA:   3'- -CAUGAgCGGgcgcUUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 12538 0.7 0.596676
Target:  5'- -aGCUUGCagGUGAGCGACGaCGACGu -3'
miRNA:   3'- caUGAGCGggCGCUUGUUGCaGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 40621 0.72 0.511126
Target:  5'- -aGCUCGCguucacgaCUGaagaGGGCAACGUCGACGu -3'
miRNA:   3'- caUGAGCG--------GGCg---CUUGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 38432 0.72 0.490487
Target:  5'- -aACUCGa--GCGAacgcGCGACGUCGACGu -3'
miRNA:   3'- caUGAGCgggCGCU----UGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 31178 0.72 0.480314
Target:  5'- gGUACUCaucugGCUgGgGAACAgcGCGUCGACGu -3'
miRNA:   3'- -CAUGAG-----CGGgCgCUUGU--UGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 2096 0.77 0.254035
Target:  5'- -cGCUCGCCUGCGAAUccuCGUCGAg- -3'
miRNA:   3'- caUGAGCGGGCGCUUGuu-GCAGCUgc -5'
16309 3' -53.8 NC_004084.1 + 47880 0.76 0.310546
Target:  5'- cUACUCGUCCGCuGGcucgGCAACG-CGACGg -3'
miRNA:   3'- cAUGAGCGGGCG-CU----UGUUGCaGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 51337 0.75 0.32609
Target:  5'- ----gCGCCCGCGAGaucuuCGUCGACGg -3'
miRNA:   3'- caugaGCGGGCGCUUguu--GCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 29189 0.74 0.384955
Target:  5'- -aACUCGCCCuGCu--CGGCGUCGAUGu -3'
miRNA:   3'- caUGAGCGGG-CGcuuGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 28911 0.74 0.384955
Target:  5'- -aGCgggugUGCCCGaGAGCGACGUCGGCc -3'
miRNA:   3'- caUGa----GCGGGCgCUUGUUGCAGCUGc -5'
16309 3' -53.8 NC_004084.1 + 41753 0.74 0.391216
Target:  5'- -gACgaCGCCgGCGAcgaggaccucccggACGACGUCGACGa -3'
miRNA:   3'- caUGa-GCGGgCGCU--------------UGUUGCAGCUGC- -5'
16309 3' -53.8 NC_004084.1 + 32426 0.73 0.421607
Target:  5'- -aGCUCGCacucgUCGCGAACGAgGUCGAgGu -3'
miRNA:   3'- caUGAGCG-----GGCGCUUGUUgCAGCUgC- -5'
16309 3' -53.8 NC_004084.1 + 18835 0.73 0.450435
Target:  5'- -aGCgCGCCCG-GGACcuCGUCGACGa -3'
miRNA:   3'- caUGaGCGGGCgCUUGuuGCAGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.