Results 1 - 20 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16323 | 3' | -59.7 | NC_004084.1 | + | 54839 | 0.66 | 0.540012 |
Target: 5'- -aCgGUCGAGGgaCCUUGAuUCGCGCGUu -3' miRNA: 3'- gcGgCGGCUCCa-GGAGCU-AGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 28091 | 0.66 | 0.519746 |
Target: 5'- uCGCCGacggucaacgguUCGGGGUgcgCCUCGAcgaGCGCGUc -3' miRNA: 3'- -GCGGC------------GGCUCCA---GGAGCUag-UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 37097 | 0.66 | 0.509725 |
Target: 5'- cCGaCC-UCGAGGUcugCCUCGAUgACGcCGCu -3' miRNA: 3'- -GC-GGcGGCUCCA---GGAGCUAgUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 56400 | 0.66 | 0.509725 |
Target: 5'- gCGCCcaGCUGGGaGUCgaaCUCGAUCGCGUc- -3' miRNA: 3'- -GCGG--CGGCUC-CAG---GAGCUAGUGCGcg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 23286 | 0.66 | 0.519746 |
Target: 5'- aGCgGCCGAccaGUCC-CGAgcgaGCGCGUg -3' miRNA: 3'- gCGgCGGCUc--CAGGaGCUag--UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 18885 | 0.66 | 0.519746 |
Target: 5'- gGCCaucaCGAGGagaUCCUCGAggACGuCGCg -3' miRNA: 3'- gCGGcg--GCUCC---AGGAGCUagUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 47948 | 0.66 | 0.529844 |
Target: 5'- gGCCGuCCGucAGGccgUCCUgGAUCGCcuCGCg -3' miRNA: 3'- gCGGC-GGC--UCC---AGGAgCUAGUGc-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 36242 | 0.66 | 0.540012 |
Target: 5'- uCGCCuaccggGUCGAcGUCCUCGAgugCGCcgagGCGCu -3' miRNA: 3'- -GCGG------CGGCUcCAGGAGCUa--GUG----CGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 683 | 0.66 | 0.550246 |
Target: 5'- gGCuuCGUCGAcGUCCUCGAgcggugCACGCa- -3' miRNA: 3'- gCG--GCGGCUcCAGGAGCUa-----GUGCGcg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 30114 | 0.66 | 0.544098 |
Target: 5'- aCGUCGCUGGGGagcgggccggggaacUgCUCGAUCuccauucCGUGCg -3' miRNA: 3'- -GCGGCGGCUCC---------------AgGAGCUAGu------GCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 44605 | 0.66 | 0.550246 |
Target: 5'- -aUCGCCGAGuGggccgaucgCCUCGGUCGCGaccaaccggaCGCg -3' miRNA: 3'- gcGGCGGCUC-Ca--------GGAGCUAGUGC----------GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 47002 | 0.66 | 0.550246 |
Target: 5'- aCGaCCG-CGAGuUCCUCGAggACGuCGCg -3' miRNA: 3'- -GC-GGCgGCUCcAGGAGCUagUGC-GCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 35140 | 0.66 | 0.540012 |
Target: 5'- gGgCGUCGAGGUCCUCGGggUACa--- -3' miRNA: 3'- gCgGCGGCUCCAGGAGCUa-GUGcgcg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 1753 | 0.66 | 0.529844 |
Target: 5'- cCGCCGCCGAaGUaCCgagCGGggcCugGCGa -3' miRNA: 3'- -GCGGCGGCUcCA-GGa--GCUa--GugCGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 26051 | 0.66 | 0.540012 |
Target: 5'- aGCUGCUugaaGAGaagCUCGAUCGCGCGg -3' miRNA: 3'- gCGGCGG----CUCcagGAGCUAGUGCGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 3349 | 0.66 | 0.529844 |
Target: 5'- -aCCGCCGAuuGGUCgUCGA-CGUGCGUc -3' miRNA: 3'- gcGGCGGCU--CCAGgAGCUaGUGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 26720 | 0.67 | 0.460943 |
Target: 5'- aGCCGCUGAGGcCCgcUCGGccCACaGCGa -3' miRNA: 3'- gCGGCGGCUCCaGG--AGCUa-GUG-CGCg -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 28335 | 0.67 | 0.457146 |
Target: 5'- uCGCCGCCGuccuucuucucgcGGacgaguagcgguUCCUCGGUCagcguuucgACGUGCa -3' miRNA: 3'- -GCGGCGGCu------------CC------------AGGAGCUAG---------UGCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 35710 | 0.67 | 0.451482 |
Target: 5'- aGCCGCacuCGAGGUUCUCa---GgGCGCg -3' miRNA: 3'- gCGGCG---GCUCCAGGAGcuagUgCGCG- -5' |
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16323 | 3' | -59.7 | NC_004084.1 | + | 56936 | 0.67 | 0.480173 |
Target: 5'- aCGUCuaCcagGAGGUCgUCGAUCGC-CGCa -3' miRNA: 3'- -GCGGcgG---CUCCAGgAGCUAGUGcGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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