miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 3' -59.7 NC_004084.1 + 35284 0.69 0.363223
Target:  5'- uCGgCGCUgggGAGGUCCUCGAUCGuuuCGaCGg -3'
miRNA:   3'- -GCgGCGG---CUCCAGGAGCUAGU---GC-GCg -5'
16323 3' -59.7 NC_004084.1 + 12949 0.69 0.363223
Target:  5'- aCGCCGaaCGAGGcucggCUUCGAUcCGCGgGCg -3'
miRNA:   3'- -GCGGCg-GCUCCa----GGAGCUA-GUGCgCG- -5'
16323 3' -59.7 NC_004084.1 + 44531 0.69 0.363223
Target:  5'- aGCUGCagggGaAGGUCCUCGGcugCugGUGCc -3'
miRNA:   3'- gCGGCGg---C-UCCAGGAGCUa--GugCGCG- -5'
16323 3' -59.7 NC_004084.1 + 56448 0.69 0.371496
Target:  5'- uGCaucCCGuuGUCCUCGAUCACGaugauCGCg -3'
miRNA:   3'- gCGgc-GGCucCAGGAGCUAGUGC-----GCG- -5'
16323 3' -59.7 NC_004084.1 + 49454 0.69 0.379896
Target:  5'- uCGUCGCCGccGUCUUCG-UCGC-CGCu -3'
miRNA:   3'- -GCGGCGGCucCAGGAGCuAGUGcGCG- -5'
16323 3' -59.7 NC_004084.1 + 35336 0.69 0.379896
Target:  5'- gGUCGCCGAcGUCCaccUCG-UCGCGuCGCc -3'
miRNA:   3'- gCGGCGGCUcCAGG---AGCuAGUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 20846 0.69 0.388422
Target:  5'- uCGCuCGCCGAGGguggcaCgUCGAcCGCGCcgGCg -3'
miRNA:   3'- -GCG-GCGGCUCCa-----GgAGCUaGUGCG--CG- -5'
16323 3' -59.7 NC_004084.1 + 36949 0.69 0.388422
Target:  5'- uCGCCGCCcucGAGGgcgagccgguUCCUCG-UCACGUcCg -3'
miRNA:   3'- -GCGGCGG---CUCC----------AGGAGCuAGUGCGcG- -5'
16323 3' -59.7 NC_004084.1 + 6266 0.68 0.397073
Target:  5'- aCGUgGUCGGcGUCCaUGAUCACGaCGCa -3'
miRNA:   3'- -GCGgCGGCUcCAGGaGCUAGUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 24998 0.68 0.397073
Target:  5'- aCGCgaUGuuGAGGcCCUCGuaCGCGUGCg -3'
miRNA:   3'- -GCG--GCggCUCCaGGAGCuaGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 19964 0.68 0.405847
Target:  5'- aGCCgGCCGuGGUUgaCGAcgucgacgUCGCGCGUu -3'
miRNA:   3'- gCGG-CGGCuCCAGgaGCU--------AGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 15405 0.68 0.405847
Target:  5'- gCGUcuCGuuGGGGaacUCCUCGAUCGCGuCGa -3'
miRNA:   3'- -GCG--GCggCUCC---AGGAGCUAGUGC-GCg -5'
16323 3' -59.7 NC_004084.1 + 21474 0.68 0.414742
Target:  5'- uCGCCcUCGAGGgcggcgaucgCCUCGGUUGCGuCGUa -3'
miRNA:   3'- -GCGGcGGCUCCa---------GGAGCUAGUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 42364 0.68 0.423755
Target:  5'- gCGCCagGCCGAGcGggagcaacgcaUCCUCGAggaggCcCGCGCa -3'
miRNA:   3'- -GCGG--CGGCUC-C-----------AGGAGCUa----GuGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 1053 0.68 0.432885
Target:  5'- -uUCGCCGAGGUCgaacagccaCUCG-UCGCGCa- -3'
miRNA:   3'- gcGGCGGCUCCAG---------GAGCuAGUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 45410 0.68 0.44027
Target:  5'- uGuuGCuCGAGGUCgUCGAUCGagccggaugucgGUGCg -3'
miRNA:   3'- gCggCG-GCUCCAGgAGCUAGUg-----------CGCG- -5'
16323 3' -59.7 NC_004084.1 + 46238 0.68 0.442128
Target:  5'- uCGCCGCUGGGGacguacCCUgCGAccUCGUGUGCg -3'
miRNA:   3'- -GCGGCGGCUCCa-----GGA-GCU--AGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 14258 0.68 0.442128
Target:  5'- uGUCGaCCgggaccaggugGAGGUCCUCGucGUCGCGaGCg -3'
miRNA:   3'- gCGGC-GG-----------CUCCAGGAGC--UAGUGCgCG- -5'
16323 3' -59.7 NC_004084.1 + 54312 0.67 0.449602
Target:  5'- aCGCUGuCCGGuGGuuauccucguuguugUCCUCGAUCAgguuccgcaucuccuCGCGCc -3'
miRNA:   3'- -GCGGC-GGCU-CC---------------AGGAGCUAGU---------------GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 35710 0.67 0.451482
Target:  5'- aGCCGCacuCGAGGUUCUCa---GgGCGCg -3'
miRNA:   3'- gCGGCG---GCUCCAGGAGcuagUgCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.