miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16323 3' -59.7 NC_004084.1 + 683 0.66 0.550246
Target:  5'- gGCuuCGUCGAcGUCCUCGAgcggugCACGCa- -3'
miRNA:   3'- gCG--GCGGCUcCAGGAGCUa-----GUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 46238 0.68 0.442128
Target:  5'- uCGCCGCUGGGGacguacCCUgCGAccUCGUGUGCg -3'
miRNA:   3'- -GCGGCGGCUCCa-----GGA-GCU--AGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 45410 0.68 0.44027
Target:  5'- uGuuGCuCGAGGUCgUCGAUCGagccggaugucgGUGCg -3'
miRNA:   3'- gCggCG-GCUCCAGgAGCUAGUg-----------CGCG- -5'
16323 3' -59.7 NC_004084.1 + 22883 1.11 0.000328
Target:  5'- uCGCCGCCGAGGUCCUCGAUCACGCGCa -3'
miRNA:   3'- -GCGGCGGCUCCAGGAGCUAGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 3349 0.66 0.529844
Target:  5'- -aCCGCCGAuuGGUCgUCGA-CGUGCGUc -3'
miRNA:   3'- gcGGCGGCU--CCAGgAGCUaGUGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 47948 0.66 0.529844
Target:  5'- gGCCGuCCGucAGGccgUCCUgGAUCGCcuCGCg -3'
miRNA:   3'- gCGGC-GGC--UCC---AGGAgCUAGUGc-GCG- -5'
16323 3' -59.7 NC_004084.1 + 23286 0.66 0.519746
Target:  5'- aGCgGCCGAccaGUCC-CGAgcgaGCGCGUg -3'
miRNA:   3'- gCGgCGGCUc--CAGGaGCUag--UGCGCG- -5'
16323 3' -59.7 NC_004084.1 + 56400 0.66 0.509725
Target:  5'- gCGCCcaGCUGGGaGUCgaaCUCGAUCGCGUc- -3'
miRNA:   3'- -GCGG--CGGCUC-CAG---GAGCUAGUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 28389 0.67 0.499786
Target:  5'- gGCCcCCGcGaGaCCUCGAUCGgCGCGUa -3'
miRNA:   3'- gCGGcGGCuC-CaGGAGCUAGU-GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 54312 0.67 0.449602
Target:  5'- aCGCUGuCCGGuGGuuauccucguuguugUCCUCGAUCAgguuccgcaucuccuCGCGCc -3'
miRNA:   3'- -GCGGC-GGCU-CC---------------AGGAGCUAGU---------------GCGCG- -5'
16323 3' -59.7 NC_004084.1 + 18852 0.67 0.489934
Target:  5'- -uUCGUCGAcGGUCCcggucgagUCGAUCGCGCu- -3'
miRNA:   3'- gcGGCGGCU-CCAGG--------AGCUAGUGCGcg -5'
16323 3' -59.7 NC_004084.1 + 16123 0.67 0.499786
Target:  5'- uCGUCGCCGAucgugaacgGGUgaCCgcggUGGUCGCGCuGCu -3'
miRNA:   3'- -GCGGCGGCU---------CCA--GGa---GCUAGUGCG-CG- -5'
16323 3' -59.7 NC_004084.1 + 36242 0.66 0.540012
Target:  5'- uCGCCuaccggGUCGAcGUCCUCGAgugCGCcgagGCGCu -3'
miRNA:   3'- -GCGG------CGGCUcCAGGAGCUa--GUG----CGCG- -5'
16323 3' -59.7 NC_004084.1 + 16522 0.67 0.480173
Target:  5'- gCGUCGCCGcGGucgucguggaccUCCUCGcaguUCGCGCagGCg -3'
miRNA:   3'- -GCGGCGGCuCC------------AGGAGCu---AGUGCG--CG- -5'
16323 3' -59.7 NC_004084.1 + 35140 0.66 0.540012
Target:  5'- gGgCGUCGAGGUCCUCGGggUACa--- -3'
miRNA:   3'- gCgGCGGCUCCAGGAGCUa-GUGcgcg -5'
16323 3' -59.7 NC_004084.1 + 37097 0.66 0.509725
Target:  5'- cCGaCC-UCGAGGUcugCCUCGAUgACGcCGCu -3'
miRNA:   3'- -GC-GGcGGCUCCA---GGAGCUAgUGC-GCG- -5'
16323 3' -59.7 NC_004084.1 + 50540 0.67 0.460943
Target:  5'- uCG-CGUCGAGGagcggagucUCCUCGAUCAUGUcCg -3'
miRNA:   3'- -GCgGCGGCUCC---------AGGAGCUAGUGCGcG- -5'
16323 3' -59.7 NC_004084.1 + 14258 0.68 0.442128
Target:  5'- uGUCGaCCgggaccaggugGAGGUCCUCGucGUCGCGaGCg -3'
miRNA:   3'- gCGGC-GG-----------CUCCAGGAGC--UAGUGCgCG- -5'
16323 3' -59.7 NC_004084.1 + 26051 0.66 0.540012
Target:  5'- aGCUGCUugaaGAGaagCUCGAUCGCGCGg -3'
miRNA:   3'- gCGGCGG----CUCcagGAGCUAGUGCGCg -5'
16323 3' -59.7 NC_004084.1 + 18885 0.66 0.519746
Target:  5'- gGCCaucaCGAGGagaUCCUCGAggACGuCGCg -3'
miRNA:   3'- gCGGcg--GCUCC---AGGAGCUagUGC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.