Results 21 - 40 of 50 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 41623 | 0.68 | 0.764791 |
Target: 5'- aCGcGAGGCGACgGUCcGGGAcAUCGaCg -3' miRNA: 3'- -GCuCUCUGCUGgUAG-CCCUaUAGCgG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 48895 | 0.68 | 0.764791 |
Target: 5'- -cAGuGAUGACCGUCGGucgGUCgGCCa -3' miRNA: 3'- gcUCuCUGCUGGUAGCCcuaUAG-CGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 57122 | 0.68 | 0.774866 |
Target: 5'- uCGAG-GACGuCC-UCGG--UGUCGCCg -3' miRNA: 3'- -GCUCuCUGCuGGuAGCCcuAUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 53125 | 0.68 | 0.774866 |
Target: 5'- cCGAGuggauGGCgGACCAUccgcugCGGGAcGUCGUCg -3' miRNA: 3'- -GCUCu----CUG-CUGGUA------GCCCUaUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 41739 | 0.68 | 0.774866 |
Target: 5'- ---cGGAUGACgAUCGGGAcgaCGCCg -3' miRNA: 3'- gcucUCUGCUGgUAGCCCUauaGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 29587 | 0.68 | 0.784795 |
Target: 5'- cCGAGAcGGCGaACCgGUCGcGAUGcUCGCCc -3' miRNA: 3'- -GCUCU-CUGC-UGG-UAGCcCUAU-AGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 8729 | 0.68 | 0.784795 |
Target: 5'- ----cGGCGucACCcUCGuGGAUGUCGCCg -3' miRNA: 3'- gcucuCUGC--UGGuAGC-CCUAUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 9937 | 0.68 | 0.802263 |
Target: 5'- aGuGAGACGugCGUCGGcGGgucggaguaGCCa -3' miRNA: 3'- gCuCUCUGCugGUAGCC-CUauag-----CGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 11054 | 0.68 | 0.80417 |
Target: 5'- uGGGAGACGcagaACCAgccGGAacuggGUCGCCa -3' miRNA: 3'- gCUCUCUGC----UGGUagcCCUa----UAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 40168 | 0.68 | 0.80417 |
Target: 5'- uCGA-AGACG-UCAUCGGGAUG--GCCa -3' miRNA: 3'- -GCUcUCUGCuGGUAGCCCUAUagCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 22336 | 0.67 | 0.813594 |
Target: 5'- gGAGAcGGCGACCucGUCGcGGuccUCGUCg -3' miRNA: 3'- gCUCU-CUGCUGG--UAGC-CCuauAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 867 | 0.67 | 0.82283 |
Target: 5'- aGAGucagucgucGACGucGCCGUCGGaaucGGUAUCGCUg -3' miRNA: 3'- gCUCu--------CUGC--UGGUAGCC----CUAUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 34607 | 0.67 | 0.826469 |
Target: 5'- -uGGAGACGcucaccgcguccauuGCCGUCuGGGA-GUCGCUc -3' miRNA: 3'- gcUCUCUGC---------------UGGUAG-CCCUaUAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 47504 | 0.67 | 0.831866 |
Target: 5'- gCGaAGAcGACGAacuccCCgAUCGGGAguacccgacgAUCGCCa -3' miRNA: 3'- -GC-UCU-CUGCU-----GG-UAGCCCUa---------UAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 41890 | 0.67 | 0.831866 |
Target: 5'- gCGAGGagguccacGACGACCG-CGGcGcgcgAUCGCCu -3' miRNA: 3'- -GCUCU--------CUGCUGGUaGCC-Cua--UAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 29388 | 0.67 | 0.840694 |
Target: 5'- aCGAGcaacggucGGGCGGCCAcuccUGGGGcGUCGCg -3' miRNA: 3'- -GCUC--------UCUGCUGGUa---GCCCUaUAGCGg -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 33219 | 0.67 | 0.840694 |
Target: 5'- -cAGAGGCGGCCGagCGGGccGUCcCCu -3' miRNA: 3'- gcUCUCUGCUGGUa-GCCCuaUAGcGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 4960 | 0.67 | 0.840694 |
Target: 5'- cCGGGAGACGAcgacCCA-CGaGGAgAUCGgCg -3' miRNA: 3'- -GCUCUCUGCU----GGUaGC-CCUaUAGCgG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 44220 | 0.67 | 0.840694 |
Target: 5'- aCGAGcGGAUGGCCGacggcUGGGAgcUCGUCu -3' miRNA: 3'- -GCUC-UCUGCUGGUa----GCCCUauAGCGG- -5' |
|||||||
16332 | 5' | -52.9 | NC_004084.1 | + | 27932 | 0.67 | 0.840694 |
Target: 5'- uGAGaAGACGACUAcUCGGGuaacugGUCGg- -3' miRNA: 3'- gCUC-UCUGCUGGU-AGCCCua----UAGCgg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home