miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16333 5' -56.2 NC_004084.1 + 6053 0.66 0.744857
Target:  5'- -gAUUCGA-UACCAgguCgGUUCCGUCCGu -3'
miRNA:   3'- agUGAGCUgGUGGU---GgCAAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 27305 0.66 0.734636
Target:  5'- -gGCUCGACgaGCUgauauucgACCGUUCaCGUUCGa -3'
miRNA:   3'- agUGAGCUGg-UGG--------UGGCAAG-GCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 36040 0.66 0.734636
Target:  5'- gCGUUCGACCuCCuggaugaugucGCUgaGUUCCGUCCGg -3'
miRNA:   3'- aGUGAGCUGGuGG-----------UGG--CAAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 33232 0.66 0.734636
Target:  5'- cCAgUUG-UgACCGCCGUUaCCGUCCc -3'
miRNA:   3'- aGUgAGCuGgUGGUGGCAA-GGCAGGc -5'
16333 5' -56.2 NC_004084.1 + 11295 0.66 0.724317
Target:  5'- cUCGCUCGGCguCgCACCGgaugcaggugCCGaCCGg -3'
miRNA:   3'- -AGUGAGCUGguG-GUGGCaa--------GGCaGGC- -5'
16333 5' -56.2 NC_004084.1 + 40275 0.66 0.724317
Target:  5'- cCACUCG-CCGgCGacgUCGUUCCaGUCCa -3'
miRNA:   3'- aGUGAGCuGGUgGU---GGCAAGG-CAGGc -5'
16333 5' -56.2 NC_004084.1 + 42284 0.67 0.682273
Target:  5'- gCGCaguUCGuCCAUCACCGUcUUCGUCuCGg -3'
miRNA:   3'- aGUG---AGCuGGUGGUGGCA-AGGCAG-GC- -5'
16333 5' -56.2 NC_004084.1 + 32391 0.67 0.682273
Target:  5'- cCGCUCGAUCGaguCCG-CGUUCgGUCCc -3'
miRNA:   3'- aGUGAGCUGGU---GGUgGCAAGgCAGGc -5'
16333 5' -56.2 NC_004084.1 + 47940 0.67 0.682273
Target:  5'- aCGCUCGAg-GCCGuCCGUcaggCCGUCCu -3'
miRNA:   3'- aGUGAGCUggUGGU-GGCAa---GGCAGGc -5'
16333 5' -56.2 NC_004084.1 + 8487 0.67 0.671623
Target:  5'- cCACU-GACCACCugCGccgCCGgaUCCa -3'
miRNA:   3'- aGUGAgCUGGUGGugGCaa-GGC--AGGc -5'
16333 5' -56.2 NC_004084.1 + 54935 0.67 0.650226
Target:  5'- aCugUCGACguCgaaCGCCGUUCCGUauucccCCGg -3'
miRNA:   3'- aGugAGCUGguG---GUGGCAAGGCA------GGC- -5'
16333 5' -56.2 NC_004084.1 + 25838 0.67 0.650226
Target:  5'- cCACUCGcCCGCUucguGCCGgaaUCC-UCCGg -3'
miRNA:   3'- aGUGAGCuGGUGG----UGGCa--AGGcAGGC- -5'
16333 5' -56.2 NC_004084.1 + 37547 0.67 0.650226
Target:  5'- aCGCUCGAuuCCAUCGCCGgcgCgGUCg- -3'
miRNA:   3'- aGUGAGCU--GGUGGUGGCaa-GgCAGgc -5'
16333 5' -56.2 NC_004084.1 + 6699 0.67 0.650226
Target:  5'- cCAuCUCGAggUCAaCGCCGgcgaugUCCGUCCGg -3'
miRNA:   3'- aGU-GAGCU--GGUgGUGGCa-----AGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 39616 0.68 0.618035
Target:  5'- gUCGC-CGACCACaCGCCcuggauGUUCCcUCCa -3'
miRNA:   3'- -AGUGaGCUGGUG-GUGG------CAAGGcAGGc -5'
16333 5' -56.2 NC_004084.1 + 16388 0.68 0.618035
Target:  5'- cUCACUCGACaucggccuCACCuCCGggaugagagUCCGUCgCGu -3'
miRNA:   3'- -AGUGAGCUG--------GUGGuGGCa--------AGGCAG-GC- -5'
16333 5' -56.2 NC_004084.1 + 27665 0.68 0.618035
Target:  5'- gUCGCUCGACU-CCGguCCGUaCaCGUCCa -3'
miRNA:   3'- -AGUGAGCUGGuGGU--GGCAaG-GCAGGc -5'
16333 5' -56.2 NC_004084.1 + 47359 0.68 0.607316
Target:  5'- uUCG-UCGGCgGCCGCCccUUCGUCCGc -3'
miRNA:   3'- -AGUgAGCUGgUGGUGGcaAGGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 5405 0.68 0.607316
Target:  5'- cCGCUCGAuCCAgUAggucUCGUggCCGUCCGg -3'
miRNA:   3'- aGUGAGCU-GGUgGU----GGCAa-GGCAGGC- -5'
16333 5' -56.2 NC_004084.1 + 42279 0.68 0.596618
Target:  5'- -aGCgCGACCACCGCgGUcacCCGUUCa -3'
miRNA:   3'- agUGaGCUGGUGGUGgCAa--GGCAGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.