miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 3' -51.7 NC_004084.1 + 57467 0.66 0.930387
Target:  5'- aGGAUGcGGUccccggagUCGAacuUGUCGAgccagaggccgugguGCUCGUCGa -3'
miRNA:   3'- -CCUAC-UCA--------AGCU---GCAGCU---------------CGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 56928 0.69 0.784846
Target:  5'- ---cGAGggCGACGUCuaccagGAGgUCGUCGa -3'
miRNA:   3'- ccuaCUCaaGCUGCAG------CUCgAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 53043 0.75 0.485523
Target:  5'- uGGAcGcccaGGUUCGACGUCGAGaUCGUCc -3'
miRNA:   3'- -CCUaC----UCAAGCUGCAGCUCgAGCAGc -5'
16346 3' -51.7 NC_004084.1 + 52642 0.68 0.840963
Target:  5'- aGGGUGAGUgccUCGGCugcggCGAGacggagaUCGUCGu -3'
miRNA:   3'- -CCUACUCA---AGCUGca---GCUCg------AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 50595 0.71 0.701583
Target:  5'- cGGAucUGGGagCGugccuccaGCGUCGAGgUCGUCGa -3'
miRNA:   3'- -CCU--ACUCaaGC--------UGCAGCUCgAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 50143 0.68 0.858015
Target:  5'- cGGAUGAcgaggUCGuuGUCGAGgaUGUCGu -3'
miRNA:   3'- -CCUACUca---AGCugCAGCUCgaGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 49608 0.69 0.823033
Target:  5'- ---cGAGUUCGcCGUCGAcggagauCUCGUCGc -3'
miRNA:   3'- ccuaCUCAAGCuGCAGCUc------GAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 49302 0.66 0.916266
Target:  5'- cGGAUGuacacUGAgCGU-GAGCUCGUCGa -3'
miRNA:   3'- -CCUACucaa-GCU-GCAgCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 47645 0.68 0.866191
Target:  5'- ---cGAcUUCGGCGUCGAGgUCGgCGa -3'
miRNA:   3'- ccuaCUcAAGCUGCAGCUCgAGCaGC- -5'
16346 3' -51.7 NC_004084.1 + 44225 0.69 0.794658
Target:  5'- cGGAUGGc--CGACGgcuggGAGCUCGUCu -3'
miRNA:   3'- -CCUACUcaaGCUGCag---CUCGAGCAGc -5'
16346 3' -51.7 NC_004084.1 + 42391 0.75 0.455307
Target:  5'- cGGAcagauUGAGUUCGuCuUUGAGCUCGUUGa -3'
miRNA:   3'- -CCU-----ACUCAAGCuGcAGCUCGAGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 33253 0.73 0.559348
Target:  5'- cGAUGAG---GACGUCGAGgaCGUCGu -3'
miRNA:   3'- cCUACUCaagCUGCAGCUCgaGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 32374 0.73 0.559348
Target:  5'- cGGUGAGa-CGACGaUCGAGCUCGggcUCGa -3'
miRNA:   3'- cCUACUCaaGCUGC-AGCUCGAGC---AGC- -5'
16346 3' -51.7 NC_004084.1 + 31341 0.7 0.733628
Target:  5'- cGGAgcAGUucgucgUCGACGUCGAGCaUCGcgCGa -3'
miRNA:   3'- -CCUacUCA------AGCUGCAGCUCG-AGCa-GC- -5'
16346 3' -51.7 NC_004084.1 + 30923 0.74 0.516661
Target:  5'- uGGAaGAcGUcgaucgcucgUCGACGUCGAGCUCGagGa -3'
miRNA:   3'- -CCUaCU-CA----------AGCUGCAGCUCGAGCagC- -5'
16346 3' -51.7 NC_004084.1 + 29744 0.69 0.8043
Target:  5'- ----cAGUgcUCGACGUUGAGCUCGcugCGg -3'
miRNA:   3'- ccuacUCA--AGCUGCAGCUCGAGCa--GC- -5'
16346 3' -51.7 NC_004084.1 + 27459 0.72 0.657959
Target:  5'- cGGAgcggGAGacggUCGGCGuccUCGAGCUCGacgUCGa -3'
miRNA:   3'- -CCUa---CUCa---AGCUGC---AGCUCGAGC---AGC- -5'
16346 3' -51.7 NC_004084.1 + 26471 0.69 0.823033
Target:  5'- uGGuUGAGcgcgccggCGACGUUGAGUguggUCGUCGu -3'
miRNA:   3'- -CCuACUCaa------GCUGCAGCUCG----AGCAGC- -5'
16346 3' -51.7 NC_004084.1 + 26306 0.67 0.874123
Target:  5'- uGGUGc--UCGACGacgagcugcUCGAGCUCGUCc -3'
miRNA:   3'- cCUACucaAGCUGC---------AGCUCGAGCAGc -5'
16346 3' -51.7 NC_004084.1 + 25995 0.67 0.889228
Target:  5'- -----cGUucgCGACGagugCGAGCUCGUCGa -3'
miRNA:   3'- ccuacuCAa--GCUGCa---GCUCGAGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.