miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16346 5' -55.1 NC_004084.1 + 57105 0.66 0.744371
Target:  5'- --aGACCGcCUCGaucCAGUCGAggaCGUCCUc -3'
miRNA:   3'- cagCUGGUaGAGC---GUCAGCU---GCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 52930 0.7 0.518793
Target:  5'- cGUCGACUgcgacgAUCUgGCcGUCGGCGUCg- -3'
miRNA:   3'- -CAGCUGG------UAGAgCGuCAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 52565 0.67 0.68068
Target:  5'- cGUCGAUCGUCUUGaucgCGACGUgCUu -3'
miRNA:   3'- -CAGCUGGUAGAGCgucaGCUGCAgGA- -5'
16346 5' -55.1 NC_004084.1 + 51226 0.71 0.438356
Target:  5'- cGUgGugCGUCgaGCAGcUCGACGUCCg -3'
miRNA:   3'- -CAgCugGUAGagCGUC-AGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 51134 0.66 0.73397
Target:  5'- uGUCGuCCuugcucauggugAUCUCGguGUCGGugucgcucuCGUCCUg -3'
miRNA:   3'- -CAGCuGG------------UAGAGCguCAGCU---------GCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 49325 0.68 0.648072
Target:  5'- cGUCGACa---UCGCccGGUCGGCGUaCCg -3'
miRNA:   3'- -CAGCUGguagAGCG--UCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 49144 0.69 0.593564
Target:  5'- cUCGACCGUCUCuGUAG-CGGCGgcaauguacgucUCCa -3'
miRNA:   3'- cAGCUGGUAGAG-CGUCaGCUGC------------AGGa -5'
16346 5' -55.1 NC_004084.1 + 48913 0.67 0.669842
Target:  5'- gGUCGGCCAcgaCUUcCGGUCGGCG-CCg -3'
miRNA:   3'- -CAGCUGGUa--GAGcGUCAGCUGCaGGa -5'
16346 5' -55.1 NC_004084.1 + 48719 0.66 0.774859
Target:  5'- cGUCGGCCAaCUcacCGCGGUcucCGGCGggCCa -3'
miRNA:   3'- -CAGCUGGUaGA---GCGUCA---GCUGCa-GGa -5'
16346 5' -55.1 NC_004084.1 + 48405 0.66 0.753637
Target:  5'- aUCGuggccGCCAUCUCGgAgaucuucGUCGACGUCg- -3'
miRNA:   3'- cAGC-----UGGUAGAGCgU-------CAGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 47255 0.68 0.608793
Target:  5'- -aCGACCggCUCGCcggcgccuacuacgaGGUCGAcgaCGUCCa -3'
miRNA:   3'- caGCUGGuaGAGCG---------------UCAGCU---GCAGGa -5'
16346 5' -55.1 NC_004084.1 + 42650 0.67 0.68068
Target:  5'- aGUCGGCgg---CGCAGUCcgacGACGUCCUc -3'
miRNA:   3'- -CAGCUGguagaGCGUCAG----CUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 40581 0.66 0.764827
Target:  5'- cUCGGCCGUCUCG-AGcUCGGCuUCUc -3'
miRNA:   3'- cAGCUGGUAGAGCgUC-AGCUGcAGGa -5'
16346 5' -55.1 NC_004084.1 + 37550 0.76 0.234096
Target:  5'- cUCGAuuCCAUCgccggCGCGGUCGACGUgCCa -3'
miRNA:   3'- cAGCU--GGUAGa----GCGUCAGCUGCA-GGa -5'
16346 5' -55.1 NC_004084.1 + 37059 0.81 0.109695
Target:  5'- uGUCGAUguUCUCGguGUCGAgGUCCUc -3'
miRNA:   3'- -CAGCUGguAGAGCguCAGCUgCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 36225 0.69 0.593564
Target:  5'- cGUUGugCucggagaaCUCGCcuaccgGGUCGACGUCCUc -3'
miRNA:   3'- -CAGCugGua------GAGCG------UCAGCUGCAGGA- -5'
16346 5' -55.1 NC_004084.1 + 36154 0.66 0.75466
Target:  5'- cUCGACUggaUCGaC-GUCGACGUCCg -3'
miRNA:   3'- cAGCUGGuagAGC-GuCAGCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 35826 0.66 0.764827
Target:  5'- -aCcACCGUCUCGuCGG-CGACGUCg- -3'
miRNA:   3'- caGcUGGUAGAGC-GUCaGCUGCAGga -5'
16346 5' -55.1 NC_004084.1 + 34930 0.66 0.774859
Target:  5'- -cCGGCCAUCUCGUcacgGGCGUUCg -3'
miRNA:   3'- caGCUGGUAGAGCGucagCUGCAGGa -5'
16346 5' -55.1 NC_004084.1 + 32048 0.66 0.723469
Target:  5'- -aCGACgAUCccgaacgcgacUCGCuGuUCGACGUCCUc -3'
miRNA:   3'- caGCUGgUAG-----------AGCGuC-AGCUGCAGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.