Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16353 | 5' | -57.2 | NC_004084.1 | + | 56924 | 0.66 | 0.655349 |
Target: 5'- -aGCUCGAGGGCgacgUcuaccaggaggucgUCGAUCGCCgcaucagcgaagCGGUc -3' miRNA: 3'- gaCGAGCUCCUG----A--------------AGCUAGCGG------------GCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 19029 | 0.66 | 0.64781 |
Target: 5'- -aGCUCGAacuGGACUUCGAaaccaugcUCGaCCCucGGa -3' miRNA: 3'- gaCGAGCU---CCUGAAGCU--------AGC-GGG--CCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 28680 | 0.66 | 0.64781 |
Target: 5'- -cGC-CGGuGGucuCUcCGGUCGCCCGGa -3' miRNA: 3'- gaCGaGCU-CCu--GAaGCUAGCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 47015 | 0.66 | 0.641342 |
Target: 5'- --cCUCGAGGACgucgcgaUCGAUgacgaugccggggagUGCCCGGa -3' miRNA: 3'- gacGAGCUCCUGa------AGCUA---------------GCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 26052 | 0.66 | 0.637028 |
Target: 5'- gCUGCUUGaAGaGAagcUCGAUCGCgCGGa -3' miRNA: 3'- -GACGAGC-UC-CUga-AGCUAGCGgGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 49321 | 0.66 | 0.626242 |
Target: 5'- -aGCUCGucGAC----AUCGCCCGGUc -3' miRNA: 3'- gaCGAGCucCUGaagcUAGCGGGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 29231 | 0.66 | 0.626242 |
Target: 5'- uUGUUCGcGGGCgaguacUCGucgCGCCCGGc -3' miRNA: 3'- gACGAGCuCCUGa-----AGCua-GCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 54826 | 0.66 | 0.61546 |
Target: 5'- -cGuCUgGAGGACguucgucgCGGUCGCCCGc- -3' miRNA: 3'- gaC-GAgCUCCUGaa------GCUAGCGGGCca -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 52247 | 0.66 | 0.61546 |
Target: 5'- -aGCUCGAGGuccacCUggagccCGAUCGCCaGGa -3' miRNA: 3'- gaCGAGCUCCu----GAa-----GCUAGCGGgCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 47487 | 0.66 | 0.612228 |
Target: 5'- gCUGUUCGAGGugUUCGGcgaagacgacgaacUC-CCCGa- -3' miRNA: 3'- -GACGAGCUCCugAAGCU--------------AGcGGGCca -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 22173 | 0.66 | 0.604693 |
Target: 5'- --aCUCGAGGACgUCGA---CCCGGUa -3' miRNA: 3'- gacGAGCUCCUGaAGCUagcGGGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 8051 | 0.66 | 0.604693 |
Target: 5'- aCUGCgcggCGuuGAUcUCGAagaugUCGCCCGGg -3' miRNA: 3'- -GACGa---GCucCUGaAGCU-----AGCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 1255 | 0.67 | 0.582165 |
Target: 5'- -cGCUUGGcgaguucGGuCUgggUGAUCGCCCGGg -3' miRNA: 3'- gaCGAGCU-------CCuGAa--GCUAGCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 50124 | 0.67 | 0.561933 |
Target: 5'- ---gUCGAGGcCcgCGAUCGUCCGGa -3' miRNA: 3'- gacgAGCUCCuGaaGCUAGCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 53412 | 0.67 | 0.55136 |
Target: 5'- aCUcCUCGAGGACcucgUCGAgauGCCCGaGUg -3' miRNA: 3'- -GAcGAGCUCCUGa---AGCUag-CGGGC-CA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 47573 | 0.67 | 0.55136 |
Target: 5'- -cGUUCGAGGACgUUCGcgaGCgCGGUg -3' miRNA: 3'- gaCGAGCUCCUG-AAGCuagCGgGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 29507 | 0.68 | 0.540848 |
Target: 5'- -aGCUUG-GGGCUccagccagccUCGAUCGCgcggCCGGUg -3' miRNA: 3'- gaCGAGCuCCUGA----------AGCUAGCG----GGCCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 53268 | 0.68 | 0.520034 |
Target: 5'- gCUGcCUCaGGGACgacgUCGGUCGCCacgccgaGGUu -3' miRNA: 3'- -GAC-GAGcUCCUGa---AGCUAGCGGg------CCA- -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 5710 | 0.68 | 0.499543 |
Target: 5'- -aGUUCGAGGAC----GUCGCUCGGg -3' miRNA: 3'- gaCGAGCUCCUGaagcUAGCGGGCCa -5' |
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16353 | 5' | -57.2 | NC_004084.1 | + | 7093 | 0.68 | 0.499543 |
Target: 5'- --uCUCGcGGGCgcacUCGAUCGCCuCGGUc -3' miRNA: 3'- gacGAGCuCCUGa---AGCUAGCGG-GCCA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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