miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16353 5' -57.2 NC_004084.1 + 50124 0.67 0.561933
Target:  5'- ---gUCGAGGcCcgCGAUCGUCCGGa -3'
miRNA:   3'- gacgAGCUCCuGaaGCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 8051 0.66 0.604693
Target:  5'- aCUGCgcggCGuuGAUcUCGAagaugUCGCCCGGg -3'
miRNA:   3'- -GACGa---GCucCUGaAGCU-----AGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 54826 0.66 0.61546
Target:  5'- -cGuCUgGAGGACguucgucgCGGUCGCCCGc- -3'
miRNA:   3'- gaC-GAgCUCCUGaa------GCUAGCGGGCca -5'
16353 5' -57.2 NC_004084.1 + 26052 0.66 0.637028
Target:  5'- gCUGCUUGaAGaGAagcUCGAUCGCgCGGa -3'
miRNA:   3'- -GACGAGC-UC-CUga-AGCUAGCGgGCCa -5'
16353 5' -57.2 NC_004084.1 + 30952 0.69 0.479417
Target:  5'- -aGCUCGAGGACgcCGAccgucuccCGCuCCGGa -3'
miRNA:   3'- gaCGAGCUCCUGaaGCUa-------GCG-GGCCa -5'
16353 5' -57.2 NC_004084.1 + 10561 0.68 0.489432
Target:  5'- -aGCUCGGGGugGCUgUCGAUCgagacgggaccgGCCUGGUu -3'
miRNA:   3'- gaCGAGCUCC--UGA-AGCUAG------------CGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 21478 0.78 0.12203
Target:  5'- --cCUCGAGGGCggCGAUCGCCuCGGUu -3'
miRNA:   3'- gacGAGCUCCUGaaGCUAGCGG-GCCA- -5'
16353 5' -57.2 NC_004084.1 + 45412 0.75 0.192843
Target:  5'- uUGCUCGAGGuCgUCGAUCGagCCGGa -3'
miRNA:   3'- gACGAGCUCCuGaAGCUAGCg-GGCCa -5'
16353 5' -57.2 NC_004084.1 + 29721 0.69 0.469504
Target:  5'- -cGUUCGAGGA----GAUCGUCCGGg -3'
miRNA:   3'- gaCGAGCUCCUgaagCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 5710 0.68 0.499543
Target:  5'- -aGUUCGAGGAC----GUCGCUCGGg -3'
miRNA:   3'- gaCGAGCUCCUGaagcUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 53268 0.68 0.520034
Target:  5'- gCUGcCUCaGGGACgacgUCGGUCGCCacgccgaGGUu -3'
miRNA:   3'- -GAC-GAGcUCCUGa---AGCUAGCGGg------CCA- -5'
16353 5' -57.2 NC_004084.1 + 7327 1.06 0.001125
Target:  5'- gCUGCUCGAGGACUUCGAUCGCCCGGUc -3'
miRNA:   3'- -GACGAGCUCCUGAAGCUAGCGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 7093 0.68 0.499543
Target:  5'- --uCUCGcGGGCgcacUCGAUCGCCuCGGUc -3'
miRNA:   3'- gacGAGCuCCUGa---AGCUAGCGG-GCCA- -5'
16353 5' -57.2 NC_004084.1 + 44799 0.69 0.45
Target:  5'- gCUGCcacggccagUCGAGGACUUCaccgauggGGUCGCUCGaGUu -3'
miRNA:   3'- -GACG---------AGCUCCUGAAG--------CUAGCGGGC-CA- -5'
16353 5' -57.2 NC_004084.1 + 1255 0.67 0.582165
Target:  5'- -cGCUUGGcgaguucGGuCUgggUGAUCGCCCGGg -3'
miRNA:   3'- gaCGAGCU-------CCuGAa--GCUAGCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 19029 0.66 0.64781
Target:  5'- -aGCUCGAacuGGACUUCGAaaccaugcUCGaCCCucGGa -3'
miRNA:   3'- gaCGAGCU---CCUGAAGCU--------AGC-GGG--CCa -5'
16353 5' -57.2 NC_004084.1 + 47015 0.66 0.641342
Target:  5'- --cCUCGAGGACgucgcgaUCGAUgacgaugccggggagUGCCCGGa -3'
miRNA:   3'- gacGAGCUCCUGa------AGCUA---------------GCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 49321 0.66 0.626242
Target:  5'- -aGCUCGucGAC----AUCGCCCGGUc -3'
miRNA:   3'- gaCGAGCucCUGaagcUAGCGGGCCA- -5'
16353 5' -57.2 NC_004084.1 + 29231 0.66 0.626242
Target:  5'- uUGUUCGcGGGCgaguacUCGucgCGCCCGGc -3'
miRNA:   3'- gACGAGCuCCUGa-----AGCua-GCGGGCCa -5'
16353 5' -57.2 NC_004084.1 + 47573 0.67 0.55136
Target:  5'- -cGUUCGAGGACgUUCGcgaGCgCGGUg -3'
miRNA:   3'- gaCGAGCUCCUG-AAGCuagCGgGCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.