miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16358 3' -54.5 NC_004084.1 + 5741 1.09 0.00151
Target:  5'- cGAUCGGGAUGAUCGCCUCGACGACGAu -3'
miRNA:   3'- -CUAGCCCUACUAGCGGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 17153 0.77 0.230579
Target:  5'- uGAUgGGGAcGAUCGCCggCGACGuCGAa -3'
miRNA:   3'- -CUAgCCCUaCUAGCGGa-GCUGCuGCU- -5'
16358 3' -54.5 NC_004084.1 + 41746 0.76 0.268837
Target:  5'- cGAUCGGGAcGA-CGCCggCGACGAgGAc -3'
miRNA:   3'- -CUAGCCCUaCUaGCGGa-GCUGCUgCU- -5'
16358 3' -54.5 NC_004084.1 + 28108 0.75 0.312054
Target:  5'- -uUCGGGGUG--CGCCUCGACGAgCGc -3'
miRNA:   3'- cuAGCCCUACuaGCGGAGCUGCU-GCu -5'
16358 3' -54.5 NC_004084.1 + 32680 0.74 0.360345
Target:  5'- --gUGGGAaGAUCGCUaCGACGAUGAc -3'
miRNA:   3'- cuaGCCCUaCUAGCGGaGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 7121 0.73 0.386372
Target:  5'- cGAUCcuGGGuuUGGUCGacggauauCCUCGACGACGAc -3'
miRNA:   3'- -CUAG--CCCu-ACUAGC--------GGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 19622 0.73 0.422947
Target:  5'- aGUCGGGGagcGAguucCGgCUCGACGACGAu -3'
miRNA:   3'- cUAGCCCUa--CUa---GCgGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 27062 0.72 0.451703
Target:  5'- cGAUCGcGcGAUGcUCGaCgUCGACGACGAa -3'
miRNA:   3'- -CUAGC-C-CUACuAGC-GgAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 35521 0.72 0.461523
Target:  5'- --gUGGGAcauccugcgcgUGAUCGaggaCCUCGGCGGCGAg -3'
miRNA:   3'- cuaGCCCU-----------ACUAGC----GGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 35213 0.72 0.461523
Target:  5'- cGUCGGGAUcgagccgacGAUCGCgaUCGACGuCGAc -3'
miRNA:   3'- cUAGCCCUA---------CUAGCGg-AGCUGCuGCU- -5'
16358 3' -54.5 NC_004084.1 + 3043 0.71 0.500848
Target:  5'- --aCGGcGAUGAUCGCCacccucgaggaacUCGuCGACGGg -3'
miRNA:   3'- cuaGCC-CUACUAGCGG-------------AGCuGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 1268 0.71 0.501876
Target:  5'- cGGUCuGGGUGAUCGCC-CGGgGAUGc -3'
miRNA:   3'- -CUAGcCCUACUAGCGGaGCUgCUGCu -5'
16358 3' -54.5 NC_004084.1 + 12130 0.71 0.533126
Target:  5'- --aCGGGGuucuUGAcCGCCaUCGGCGAUGAu -3'
miRNA:   3'- cuaGCCCU----ACUaGCGG-AGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 6897 0.7 0.554342
Target:  5'- cGUCGGGAUcgcGAcCGUCUCGACGAg-- -3'
miRNA:   3'- cUAGCCCUA---CUaGCGGAGCUGCUgcu -5'
16358 3' -54.5 NC_004084.1 + 44613 0.7 0.565044
Target:  5'- --gUGGGccGAUCGCCUCGGuCG-CGAc -3'
miRNA:   3'- cuaGCCCuaCUAGCGGAGCU-GCuGCU- -5'
16358 3' -54.5 NC_004084.1 + 57662 0.69 0.597438
Target:  5'- cGAUCGGccuGGUGGUccagCGCCUCcGACGuCGAg -3'
miRNA:   3'- -CUAGCC---CUACUA----GCGGAG-CUGCuGCU- -5'
16358 3' -54.5 NC_004084.1 + 29413 0.69 0.608305
Target:  5'- --cUGGGGcgucgcGGUUGCCgUCGACGGCGAg -3'
miRNA:   3'- cuaGCCCUa-----CUAGCGG-AGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 42306 0.69 0.619193
Target:  5'- cGAUCGGcGAcGAUCGCgaCGACcgucggGACGAg -3'
miRNA:   3'- -CUAGCC-CUaCUAGCGgaGCUG------CUGCU- -5'
16358 3' -54.5 NC_004084.1 + 16960 0.68 0.673604
Target:  5'- cGUCGGGucuucGAgCGCCUgGACGACu- -3'
miRNA:   3'- cUAGCCCua---CUaGCGGAgCUGCUGcu -5'
16358 3' -54.5 NC_004084.1 + 52631 0.68 0.683334
Target:  5'- cGUCGGauaccagGGUGAgUGCCUCGgcuGCGGCGAg -3'
miRNA:   3'- cUAGCC-------CUACUaGCGGAGC---UGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.