miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16358 3' -54.5 NC_004084.1 + 18129 0.66 0.768193
Target:  5'- cGAUCcGGAUGGacuggaacgacgUCGCCggcgaGugGACGAu -3'
miRNA:   3'- -CUAGcCCUACU------------AGCGGag---CugCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 53244 0.68 0.695172
Target:  5'- cGAgCGGGc-GGUCGUCgaCGGCGACGAg -3'
miRNA:   3'- -CUaGCCCuaCUAGCGGa-GCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 28986 0.67 0.716499
Target:  5'- -uUCGcGGUGAagcUCGCCgUCGACGGCa- -3'
miRNA:   3'- cuAGCcCUACU---AGCGG-AGCUGCUGcu -5'
16358 3' -54.5 NC_004084.1 + 34791 0.67 0.716499
Target:  5'- --gCaGGAUGA-CGCCUCGACGGgccUGAc -3'
miRNA:   3'- cuaGcCCUACUaGCGGAGCUGCU---GCU- -5'
16358 3' -54.5 NC_004084.1 + 55980 0.67 0.727046
Target:  5'- cGGagGGGcUGAUCGCC--GAUGGCGAg -3'
miRNA:   3'- -CUagCCCuACUAGCGGagCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 22457 0.67 0.7375
Target:  5'- aGUCGGGAcUGGUcacggcCGCCgacccCGGCGACGc -3'
miRNA:   3'- cUAGCCCU-ACUA------GCGGa----GCUGCUGCu -5'
16358 3' -54.5 NC_004084.1 + 11822 0.67 0.74682
Target:  5'- -cUCGGGAaccacGAggucgaaUCGCCU-GACGGCGAu -3'
miRNA:   3'- cuAGCCCUa----CU-------AGCGGAgCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 8155 0.67 0.74785
Target:  5'- cGUCGaGGAcc-UCGCCgccaaCGGCGACGAg -3'
miRNA:   3'- cUAGC-CCUacuAGCGGa----GCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 22493 0.66 0.767188
Target:  5'- --cCGGGGacaUGcUCGugaaccgcgucauCCUCGACGACGAu -3'
miRNA:   3'- cuaGCCCU---ACuAGC-------------GGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 52631 0.68 0.683334
Target:  5'- cGUCGGauaccagGGUGAgUGCCUCGgcuGCGGCGAg -3'
miRNA:   3'- cUAGCC-------CUACUaGCGGAGC---UGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 42306 0.69 0.619193
Target:  5'- cGAUCGGcGAcGAUCGCgaCGACcgucggGACGAg -3'
miRNA:   3'- -CUAGCC-CUaCUAGCGgaGCUG------CUGCU- -5'
16358 3' -54.5 NC_004084.1 + 44613 0.7 0.565044
Target:  5'- --gUGGGccGAUCGCCUCGGuCG-CGAc -3'
miRNA:   3'- cuaGCCCuaCUAGCGGAGCU-GCuGCU- -5'
16358 3' -54.5 NC_004084.1 + 41746 0.76 0.268837
Target:  5'- cGAUCGGGAcGA-CGCCggCGACGAgGAc -3'
miRNA:   3'- -CUAGCCCUaCUaGCGGa-GCUGCUgCU- -5'
16358 3' -54.5 NC_004084.1 + 28108 0.75 0.312054
Target:  5'- -uUCGGGGUG--CGCCUCGACGAgCGc -3'
miRNA:   3'- cuAGCCCUACuaGCGGAGCUGCU-GCu -5'
16358 3' -54.5 NC_004084.1 + 32680 0.74 0.360345
Target:  5'- --gUGGGAaGAUCGCUaCGACGAUGAc -3'
miRNA:   3'- cuaGCCCUaCUAGCGGaGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 7121 0.73 0.386372
Target:  5'- cGAUCcuGGGuuUGGUCGacggauauCCUCGACGACGAc -3'
miRNA:   3'- -CUAG--CCCu-ACUAGC--------GGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 19622 0.73 0.422947
Target:  5'- aGUCGGGGagcGAguucCGgCUCGACGACGAu -3'
miRNA:   3'- cUAGCCCUa--CUa---GCgGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 35213 0.72 0.461523
Target:  5'- cGUCGGGAUcgagccgacGAUCGCgaUCGACGuCGAc -3'
miRNA:   3'- cUAGCCCUA---------CUAGCGg-AGCUGCuGCU- -5'
16358 3' -54.5 NC_004084.1 + 35521 0.72 0.461523
Target:  5'- --gUGGGAcauccugcgcgUGAUCGaggaCCUCGGCGGCGAg -3'
miRNA:   3'- cuaGCCCU-----------ACUAGC----GGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 3043 0.71 0.500848
Target:  5'- --aCGGcGAUGAUCGCCacccucgaggaacUCGuCGACGGg -3'
miRNA:   3'- cuaGCC-CUACUAGCGG-------------AGCuGCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.