miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16358 3' -54.5 NC_004084.1 + 1268 0.71 0.501876
Target:  5'- cGGUCuGGGUGAUCGCC-CGGgGAUGc -3'
miRNA:   3'- -CUAGcCCUACUAGCGGaGCUgCUGCu -5'
16358 3' -54.5 NC_004084.1 + 3043 0.71 0.500848
Target:  5'- --aCGGcGAUGAUCGCCacccucgaggaacUCGuCGACGGg -3'
miRNA:   3'- cuaGCC-CUACUAGCGG-------------AGCuGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 5446 0.66 0.807143
Target:  5'- cGAUCGGcGAccagCGCaCUCG-CGACGAu -3'
miRNA:   3'- -CUAGCC-CUacuaGCG-GAGCuGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 5741 1.09 0.00151
Target:  5'- cGAUCGGGAUGAUCGCCUCGACGACGAu -3'
miRNA:   3'- -CUAGCCCUACUAGCGGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 6897 0.7 0.554342
Target:  5'- cGUCGGGAUcgcGAcCGUCUCGACGAg-- -3'
miRNA:   3'- cUAGCCCUA---CUaGCGGAGCUGCUgcu -5'
16358 3' -54.5 NC_004084.1 + 7121 0.73 0.386372
Target:  5'- cGAUCcuGGGuuUGGUCGacggauauCCUCGACGACGAc -3'
miRNA:   3'- -CUAG--CCCu-ACUAGC--------GGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 8155 0.67 0.74785
Target:  5'- cGUCGaGGAcc-UCGCCgccaaCGGCGACGAg -3'
miRNA:   3'- cUAGC-CCUacuAGCGGa----GCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 8471 0.66 0.787986
Target:  5'- gGAUCGGGGcuGUgGCCg-GACGACa- -3'
miRNA:   3'- -CUAGCCCUacUAgCGGagCUGCUGcu -5'
16358 3' -54.5 NC_004084.1 + 9845 0.67 0.727046
Target:  5'- uGUCGGcugcguccUGAuUCGCCUCGaccGCGACGAg -3'
miRNA:   3'- cUAGCCcu------ACU-AGCGGAGC---UGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 11822 0.67 0.74682
Target:  5'- -cUCGGGAaccacGAggucgaaUCGCCU-GACGGCGAu -3'
miRNA:   3'- cuAGCCCUa----CU-------AGCGGAgCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 12130 0.71 0.533126
Target:  5'- --aCGGGGuucuUGAcCGCCaUCGGCGAUGAu -3'
miRNA:   3'- cuaGCCCU----ACUaGCGG-AGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 12197 0.66 0.807143
Target:  5'- --gCGGcgaccugauGAUGAUCGUCgacgcaucCGACGACGAu -3'
miRNA:   3'- cuaGCC---------CUACUAGCGGa-------GCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 16960 0.68 0.673604
Target:  5'- cGUCGGGucuucGAgCGCCUgGACGACu- -3'
miRNA:   3'- cUAGCCCua---CUaGCGGAgCUGCUGcu -5'
16358 3' -54.5 NC_004084.1 + 17153 0.77 0.230579
Target:  5'- uGAUgGGGAcGAUCGCCggCGACGuCGAa -3'
miRNA:   3'- -CUAgCCCUaCUAGCGGa-GCUGCuGCU- -5'
16358 3' -54.5 NC_004084.1 + 18129 0.66 0.768193
Target:  5'- cGAUCcGGAUGGacuggaacgacgUCGCCggcgaGugGACGAu -3'
miRNA:   3'- -CUAGcCCUACU------------AGCGGag---CugCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 19622 0.73 0.422947
Target:  5'- aGUCGGGGagcGAguucCGgCUCGACGACGAu -3'
miRNA:   3'- cUAGCCCUa--CUa---GCgGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 22457 0.67 0.7375
Target:  5'- aGUCGGGAcUGGUcacggcCGCCgacccCGGCGACGc -3'
miRNA:   3'- cUAGCCCU-ACUA------GCGGa----GCUGCUGCu -5'
16358 3' -54.5 NC_004084.1 + 22493 0.66 0.767188
Target:  5'- --cCGGGGacaUGcUCGugaaccgcgucauCCUCGACGACGAu -3'
miRNA:   3'- cuaGCCCU---ACuAGC-------------GGAGCUGCUGCU- -5'
16358 3' -54.5 NC_004084.1 + 22932 0.66 0.787986
Target:  5'- uGGUCGGGAUcucggcGAUCGCCccUCGACcuGCu- -3'
miRNA:   3'- -CUAGCCCUA------CUAGCGG--AGCUGc-UGcu -5'
16358 3' -54.5 NC_004084.1 + 23200 0.66 0.778163
Target:  5'- cGAUCGcGAUcGUCGgCUCGAuccCGACGAu -3'
miRNA:   3'- -CUAGCcCUAcUAGCgGAGCU---GCUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.