miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 3' -54.4 NC_004084.1 + 1191 1.09 0.0012
Target:  5'- gUUCGCCAACGGCUCGAUCCUGAACGCu -3'
miRNA:   3'- -AAGCGGUUGCCGAGCUAGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 28090 0.74 0.307507
Target:  5'- cUCGCCGACGGUcaaCGGUUCgGggUGCg -3'
miRNA:   3'- aAGCGGUUGCCGa--GCUAGGaCuuGCG- -5'
16369 3' -54.4 NC_004084.1 + 27355 0.74 0.312133
Target:  5'- aUCGUCAGCGGUUCGGaCCgcgagaucucgucGAGCGCg -3'
miRNA:   3'- aAGCGGUUGCCGAGCUaGGa------------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47392 0.74 0.339336
Target:  5'- aUCGCCGuucGCGGCUCGAaggaugUCCcagagccgcUGGACGUc -3'
miRNA:   3'- aAGCGGU---UGCCGAGCU------AGG---------ACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 35588 0.73 0.347658
Target:  5'- gUUCGCCucgGCGGCUCGAacggaucgaUCCguGACGCc -3'
miRNA:   3'- -AAGCGGu--UGCCGAGCU---------AGGacUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 40518 0.73 0.382384
Target:  5'- gUCGCCcuCGGcCUCGAUCUcGAACaGCu -3'
miRNA:   3'- aAGCGGuuGCC-GAGCUAGGaCUUG-CG- -5'
16369 3' -54.4 NC_004084.1 + 40105 0.73 0.382384
Target:  5'- -aCGCCAGCGGCuUCGAgUCCUacgaggccgacGGugGCc -3'
miRNA:   3'- aaGCGGUUGCCG-AGCU-AGGA-----------CUugCG- -5'
16369 3' -54.4 NC_004084.1 + 29191 0.72 0.391418
Target:  5'- cUCGCCcugcuCGGCgUCGAuguUCCaGAGCGCg -3'
miRNA:   3'- aAGCGGuu---GCCG-AGCU---AGGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 8330 0.72 0.438615
Target:  5'- gUCGUCAGCGGCgUCGAUCguCUcGACGUc -3'
miRNA:   3'- aAGCGGUUGCCG-AGCUAG--GAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47386 0.72 0.438615
Target:  5'- gUCGUCGACGGCgagcUCCaGGGCGCg -3'
miRNA:   3'- aAGCGGUUGCCGagcuAGGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 8240 0.71 0.488902
Target:  5'- gUCGCCGuugGCGGCgaGGUCCUcGACGUc -3'
miRNA:   3'- aAGCGGU---UGCCGagCUAGGAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 55128 0.71 0.488902
Target:  5'- -gCGUCGACGGUguucuuggccUCGAacggaCCUGGGCGCa -3'
miRNA:   3'- aaGCGGUUGCCG----------AGCUa----GGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47661 0.7 0.499286
Target:  5'- gUCGCCAcCGcGCUCGcgaacGUCCUcGAACGg -3'
miRNA:   3'- aAGCGGUuGC-CGAGC-----UAGGA-CUUGCg -5'
16369 3' -54.4 NC_004084.1 + 22645 0.7 0.509766
Target:  5'- -gCGCCucCGGCUCGAaCCUcuacgggaucgaGAugGCa -3'
miRNA:   3'- aaGCGGuuGCCGAGCUaGGA------------CUugCG- -5'
16369 3' -54.4 NC_004084.1 + 44538 0.7 0.520338
Target:  5'- cUCGCUccggAACGG-UCGAUgcaCUGAACGCg -3'
miRNA:   3'- aAGCGG----UUGCCgAGCUAg--GACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 54032 0.7 0.530994
Target:  5'- aUUCGCCuucgacgagGACGGCUaCGGU--UGGACGCg -3'
miRNA:   3'- -AAGCGG---------UUGCCGA-GCUAggACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 28969 0.7 0.530994
Target:  5'- cUUCGCCAcccGCGGCgaGAUCUcgcugcgGAACGCc -3'
miRNA:   3'- -AAGCGGU---UGCCGagCUAGGa------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 43467 0.7 0.541729
Target:  5'- -gCGUCGACGGCcacUCGAgguggugcUCCUGgAGCGUg -3'
miRNA:   3'- aaGCGGUUGCCG---AGCU--------AGGAC-UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 57416 0.7 0.541729
Target:  5'- gUCGCCGGCGaGCUCGAgg-UGGACa- -3'
miRNA:   3'- aAGCGGUUGC-CGAGCUaggACUUGcg -5'
16369 3' -54.4 NC_004084.1 + 38454 0.7 0.541729
Target:  5'- gUCGCCuuccCGcGCUCGAUCCg--GCGUa -3'
miRNA:   3'- aAGCGGuu--GC-CGAGCUAGGacuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.