miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 3' -54.4 NC_004084.1 + 115 0.67 0.706535
Target:  5'- aUCgGCCGACGGCg-GGUCUgc-ACGCa -3'
miRNA:   3'- aAG-CGGUUGCCGagCUAGGacuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 472 0.68 0.673742
Target:  5'- gUUGCC--CGGUucgucgccUCGAUCCUGcuGGCGCa -3'
miRNA:   3'- aAGCGGuuGCCG--------AGCUAGGAC--UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 772 0.66 0.738664
Target:  5'- --gGCCGAuCGGCUCG-UCgaGGcgACGCg -3'
miRNA:   3'- aagCGGUU-GCCGAGCuAGgaCU--UGCG- -5'
16369 3' -54.4 NC_004084.1 + 1191 1.09 0.0012
Target:  5'- gUUCGCCAACGGCUCGAUCCUGAACGCu -3'
miRNA:   3'- -AAGCGGUUGCCGAGCUAGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 1660 0.68 0.673742
Target:  5'- cUCGUcauCAugGGCUCGucgggcgaCCUGAucgACGCg -3'
miRNA:   3'- aAGCG---GUugCCGAGCua------GGACU---UGCG- -5'
16369 3' -54.4 NC_004084.1 + 1832 0.66 0.738664
Target:  5'- -aCGCCGcguucACGGUgUGGcUCCUGcAGCGCg -3'
miRNA:   3'- aaGCGGU-----UGCCGaGCU-AGGAC-UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 4174 0.68 0.618429
Target:  5'- cUCGCCGACGGCgcugaUCGcUCC--GACGUc -3'
miRNA:   3'- aAGCGGUUGCCG-----AGCuAGGacUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 4286 0.69 0.585305
Target:  5'- -cCGUCAGCGGCUCGAgucggaUCUcGACGUc -3'
miRNA:   3'- aaGCGGUUGCCGAGCUa-----GGAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 4549 0.66 0.779924
Target:  5'- cUUCGCCAGCucgaaCUCGAUCgUccagucGGGCGCg -3'
miRNA:   3'- -AAGCGGUUGcc---GAGCUAGgA------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 4773 0.68 0.651661
Target:  5'- cUCGU---CGGCUCGGUCCUcGACGa -3'
miRNA:   3'- aAGCGguuGCCGAGCUAGGAcUUGCg -5'
16369 3' -54.4 NC_004084.1 + 5482 0.66 0.748126
Target:  5'- -aCGCCGACGGCcagaucgucgcagUCGAcgagucguUCCUagugGGugGCg -3'
miRNA:   3'- aaGCGGUUGCCG-------------AGCU--------AGGA----CUugCG- -5'
16369 3' -54.4 NC_004084.1 + 7981 0.66 0.738664
Target:  5'- -gCGCCGACuGuCUCGGUUCgGAuCGCg -3'
miRNA:   3'- aaGCGGUUGcC-GAGCUAGGaCUuGCG- -5'
16369 3' -54.4 NC_004084.1 + 8169 0.68 0.673742
Target:  5'- -cCGCCAACGGCga---CgaGGACGCa -3'
miRNA:   3'- aaGCGGUUGCCGagcuaGgaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 8240 0.71 0.488902
Target:  5'- gUCGCCGuugGCGGCgaGGUCCUcGACGUc -3'
miRNA:   3'- aAGCGGU---UGCCGagCUAGGAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 8330 0.72 0.438615
Target:  5'- gUCGUCAGCGGCgUCGAUCguCUcGACGUc -3'
miRNA:   3'- aAGCGGUUGCCG-AGCUAG--GAcUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 10007 0.7 0.551451
Target:  5'- cUCGCUGA-GGCUCGucgaggcgcucuuGUCUUGGACGUa -3'
miRNA:   3'- aAGCGGUUgCCGAGC-------------UAGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 12035 0.66 0.769813
Target:  5'- aUCGUCGAUucgaccugaagGGCgUCGGugUCCUGGACGa -3'
miRNA:   3'- aAGCGGUUG-----------CCG-AGCU--AGGACUUGCg -5'
16369 3' -54.4 NC_004084.1 + 14701 0.65 0.785917
Target:  5'- gUCGCCAucgAUGGCguccuggagcucgUUGAgaucguuguagaucUCCUGAGCGUc -3'
miRNA:   3'- aAGCGGU---UGCCG-------------AGCU--------------AGGACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 15557 0.67 0.706535
Target:  5'- -aCGUCGACGGgUCGGUCgau-GCGCu -3'
miRNA:   3'- aaGCGGUUGCCgAGCUAGgacuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 16862 0.68 0.673742
Target:  5'- -aCGCC-GCGGCgaaCGGUgCgagGAGCGCc -3'
miRNA:   3'- aaGCGGuUGCCGa--GCUAgGa--CUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.