miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16369 3' -54.4 NC_004084.1 + 46285 0.67 0.714103
Target:  5'- aUCGCCGAUGGCggucaagaaccccgUCaggauGAUCgaGAGCGUg -3'
miRNA:   3'- aAGCGGUUGCCG--------------AG-----CUAGgaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 39084 0.69 0.607363
Target:  5'- cUCGCgAgaagaggcugaGCGGCaguUCGGUUCUGAAgGCg -3'
miRNA:   3'- aAGCGgU-----------UGCCG---AGCUAGGACUUgCG- -5'
16369 3' -54.4 NC_004084.1 + 4174 0.68 0.618429
Target:  5'- cUCGCCGACGGCgcugaUCGcUCC--GACGUc -3'
miRNA:   3'- aAGCGGUUGCCG-----AGCuAGGacUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 43787 0.68 0.651661
Target:  5'- cUCGCCGGCGGa--GAgUCCggcggcgagGAGCGCc -3'
miRNA:   3'- aAGCGGUUGCCgagCU-AGGa--------CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 1660 0.68 0.673742
Target:  5'- cUCGUcauCAugGGCUCGucgggcgaCCUGAucgACGCg -3'
miRNA:   3'- aAGCG---GUugCCGAGCua------GGACU---UGCG- -5'
16369 3' -54.4 NC_004084.1 + 472 0.68 0.673742
Target:  5'- gUUGCC--CGGUucgucgccUCGAUCCUGcuGGCGCa -3'
miRNA:   3'- aAGCGGuuGCCG--------AGCUAGGAC--UUGCG- -5'
16369 3' -54.4 NC_004084.1 + 8169 0.68 0.673742
Target:  5'- -cCGCCAACGGCga---CgaGGACGCa -3'
miRNA:   3'- aaGCGGUUGCCGagcuaGgaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 15557 0.67 0.706535
Target:  5'- -aCGUCGACGGgUCGGUCgau-GCGCu -3'
miRNA:   3'- aaGCGGUUGCCgAGCUAGgacuUGCG- -5'
16369 3' -54.4 NC_004084.1 + 16919 0.67 0.706535
Target:  5'- gUCGCCAGCGGCauccgcgaUCGucuUCCguucuCGCc -3'
miRNA:   3'- aAGCGGUUGCCG--------AGCu--AGGacuu-GCG- -5'
16369 3' -54.4 NC_004084.1 + 37844 0.69 0.596318
Target:  5'- uUUCGUCGACGGC-CGAUUC-GAACu- -3'
miRNA:   3'- -AAGCGGUUGCCGaGCUAGGaCUUGcg -5'
16369 3' -54.4 NC_004084.1 + 58211 0.69 0.585305
Target:  5'- -cCGCCGAUGGCcgugCGGgcUCCcgGAACGUc -3'
miRNA:   3'- aaGCGGUUGCCGa---GCU--AGGa-CUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 44357 0.69 0.563405
Target:  5'- gUCGCggugaCAACGGCgagCGAcaccUCCUGAACa- -3'
miRNA:   3'- aAGCG-----GUUGCCGa--GCU----AGGACUUGcg -5'
16369 3' -54.4 NC_004084.1 + 28090 0.74 0.307507
Target:  5'- cUCGCCGACGGUcaaCGGUUCgGggUGCg -3'
miRNA:   3'- aAGCGGUUGCCGa--GCUAGGaCuuGCG- -5'
16369 3' -54.4 NC_004084.1 + 35588 0.73 0.347658
Target:  5'- gUUCGCCucgGCGGCUCGAacggaucgaUCCguGACGCc -3'
miRNA:   3'- -AAGCGGu--UGCCGAGCU---------AGGacUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 40105 0.73 0.382384
Target:  5'- -aCGCCAGCGGCuUCGAgUCCUacgaggccgacGGugGCc -3'
miRNA:   3'- aaGCGGUUGCCG-AGCU-AGGA-----------CUugCG- -5'
16369 3' -54.4 NC_004084.1 + 29191 0.72 0.391418
Target:  5'- cUCGCCcugcuCGGCgUCGAuguUCCaGAGCGCg -3'
miRNA:   3'- aAGCGGuu---GCCG-AGCU---AGGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 47386 0.72 0.438615
Target:  5'- gUCGUCGACGGCgagcUCCaGGGCGCg -3'
miRNA:   3'- aAGCGGUUGCCGagcuAGGaCUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 22645 0.7 0.509766
Target:  5'- -gCGCCucCGGCUCGAaCCUcuacgggaucgaGAugGCa -3'
miRNA:   3'- aaGCGGuuGCCGAGCUaGGA------------CUugCG- -5'
16369 3' -54.4 NC_004084.1 + 54032 0.7 0.530994
Target:  5'- aUUCGCCuucgacgagGACGGCUaCGGU--UGGACGCg -3'
miRNA:   3'- -AAGCGG---------UUGCCGA-GCUAggACUUGCG- -5'
16369 3' -54.4 NC_004084.1 + 57416 0.7 0.541729
Target:  5'- gUCGCCGGCGaGCUCGAgg-UGGACa- -3'
miRNA:   3'- aAGCGGUUGC-CGAGCUaggACUUGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.