miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16441 3' -47 NC_004084.1 + 38042 1.08 0.008658
Target:  5'- gAAAACAACGAGACAACGCGCGAAUCAa -3'
miRNA:   3'- -UUUUGUUGCUCUGUUGCGCGCUUAGU- -5'
16441 3' -47 NC_004084.1 + 3565 0.75 0.681316
Target:  5'- aGGAGCAu---GugAACGCGCGAAUCAa -3'
miRNA:   3'- -UUUUGUugcuCugUUGCGCGCUUAGU- -5'
16441 3' -47 NC_004084.1 + 21988 0.75 0.704435
Target:  5'- cAGACGGCGuacgucGACGACGCGCGGAc-- -3'
miRNA:   3'- uUUUGUUGCu-----CUGUUGCGCGCUUagu -5'
16441 3' -47 NC_004084.1 + 779 0.75 0.715881
Target:  5'- -cGGCucguCGAGGCGACGCGCGAccUCGa -3'
miRNA:   3'- uuUUGuu--GCUCUGUUGCGCGCUu-AGU- -5'
16441 3' -47 NC_004084.1 + 46991 0.75 0.715881
Target:  5'- cGAACuuCGAGACGAC-CGCGAGUUc -3'
miRNA:   3'- uUUUGuuGCUCUGUUGcGCGCUUAGu -5'
16441 3' -47 NC_004084.1 + 28552 0.73 0.813005
Target:  5'- -uGACGACGAGAuCAcCGCGUGGAcgaUCAg -3'
miRNA:   3'- uuUUGUUGCUCU-GUuGCGCGCUU---AGU- -5'
16441 3' -47 NC_004084.1 + 54397 0.72 0.832554
Target:  5'- --cACGAUGAuGGCGAUGCGCGGAaCAc -3'
miRNA:   3'- uuuUGUUGCU-CUGUUGCGCGCUUaGU- -5'
16441 3' -47 NC_004084.1 + 51158 0.72 0.860055
Target:  5'- gGAGGCGAuCGAGACGgucgccgagcACGCGCcGAUCGu -3'
miRNA:   3'- -UUUUGUU-GCUCUGU----------UGCGCGcUUAGU- -5'
16441 3' -47 NC_004084.1 + 43333 0.71 0.868694
Target:  5'- -cGACGACGAGugGACGgucucgaaCGcCGAGUCGa -3'
miRNA:   3'- uuUUGUUGCUCugUUGC--------GC-GCUUAGU- -5'
16441 3' -47 NC_004084.1 + 56445 0.71 0.885127
Target:  5'- cGAACGACGAucucGACGGCGCGCucucGGUCu -3'
miRNA:   3'- uUUUGUUGCU----CUGUUGCGCGc---UUAGu -5'
16441 3' -47 NC_004084.1 + 54172 0.71 0.892906
Target:  5'- aGAAGCAACGAGGCGACcaCGuCGggUgGg -3'
miRNA:   3'- -UUUUGUUGCUCUGUUGc-GC-GCuuAgU- -5'
16441 3' -47 NC_004084.1 + 6425 0.71 0.900385
Target:  5'- cGGAUGACGAGACGugGUGCGc---- -3'
miRNA:   3'- uUUUGUUGCUCUGUugCGCGCuuagu -5'
16441 3' -47 NC_004084.1 + 41901 0.7 0.914423
Target:  5'- --cACGACGAccGCGGCGCGCG-AUCGc -3'
miRNA:   3'- uuuUGUUGCUc-UGUUGCGCGCuUAGU- -5'
16441 3' -47 NC_004084.1 + 41084 0.7 0.914423
Target:  5'- ---uCGACGAGACGAUGCGgGccGUCGc -3'
miRNA:   3'- uuuuGUUGCUCUGUUGCGCgCu-UAGU- -5'
16441 3' -47 NC_004084.1 + 28883 0.69 0.944049
Target:  5'- --cGCAGCGAGAUcuCGCcGCGggUg- -3'
miRNA:   3'- uuuUGUUGCUCUGuuGCG-CGCuuAgu -5'
16441 3' -47 NC_004084.1 + 28956 0.69 0.94904
Target:  5'- cGAGCGcgucuACGAGAaaaucuacCAGCGCGCGAccgacGUCGg -3'
miRNA:   3'- uUUUGU-----UGCUCU--------GUUGCGCGCU-----UAGU- -5'
16441 3' -47 NC_004084.1 + 29757 0.69 0.952351
Target:  5'- ---cCGGCGAGACGAugaccguccugcauCGCGaCGggUCGg -3'
miRNA:   3'- uuuuGUUGCUCUGUU--------------GCGC-GCuuAGU- -5'
16441 3' -47 NC_004084.1 + 50785 0.69 0.953725
Target:  5'- uGAGAcCGACGAGACGAaccCGgGAAUCGu -3'
miRNA:   3'- -UUUU-GUUGCUCUGUUgc-GCgCUUAGU- -5'
16441 3' -47 NC_004084.1 + 45686 0.69 0.953725
Target:  5'- ---uCGACGAGAUcgUGCGCGGAg-- -3'
miRNA:   3'- uuuuGUUGCUCUGuuGCGCGCUUagu -5'
16441 3' -47 NC_004084.1 + 52473 0.69 0.953725
Target:  5'- cGAugGcCGAGGCGAaGCGCGAcGUCAu -3'
miRNA:   3'- uUUugUuGCUCUGUUgCGCGCU-UAGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.