miRNA display CGI


Results 1 - 20 of 41 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16441 3' -47 NC_004084.1 + 12089 0.67 0.980815
Target:  5'- cGAGCGACGAgGACAugGgaaugauCGCGAacggaGUCAa -3'
miRNA:   3'- uUUUGUUGCU-CUGUugC-------GCGCU-----UAGU- -5'
16441 3' -47 NC_004084.1 + 45686 0.69 0.953725
Target:  5'- ---uCGACGAGAUcgUGCGCGGAg-- -3'
miRNA:   3'- uuuuGUUGCUCUGuuGCGCGCUUagu -5'
16441 3' -47 NC_004084.1 + 50785 0.69 0.953725
Target:  5'- uGAGAcCGACGAGACGAaccCGgGAAUCGu -3'
miRNA:   3'- -UUUU-GUUGCUCUGUUgc-GCgCUUAGU- -5'
16441 3' -47 NC_004084.1 + 52473 0.69 0.953725
Target:  5'- cGAugGcCGAGGCGAaGCGCGAcGUCAu -3'
miRNA:   3'- uUUugUuGCUCUGUUgCGCGCU-UAGU- -5'
16441 3' -47 NC_004084.1 + 54066 0.68 0.958112
Target:  5'- --cGCGACGAGGaGACGgGCGAGcCGa -3'
miRNA:   3'- uuuUGUUGCUCUgUUGCgCGCUUaGU- -5'
16441 3' -47 NC_004084.1 + 41743 0.68 0.962204
Target:  5'- -uGACGAuCGGGACGACGCcgGCGAc--- -3'
miRNA:   3'- uuUUGUU-GCUCUGUUGCG--CGCUuagu -5'
16441 3' -47 NC_004084.1 + 43558 0.68 0.962204
Target:  5'- cGAGAcCGGCGGccgucaucccGACGAgGCGCGGAUCc -3'
miRNA:   3'- -UUUU-GUUGCU----------CUGUUgCGCGCUUAGu -5'
16441 3' -47 NC_004084.1 + 38346 0.68 0.972482
Target:  5'- ---cCAGCGGGACAucauguucugccuACGC-CGGAUCGa -3'
miRNA:   3'- uuuuGUUGCUCUGU-------------UGCGcGCUUAGU- -5'
16441 3' -47 NC_004084.1 + 46718 0.67 0.975795
Target:  5'- --cGCGACGAGugGuCGgGCGAgcacAUCGa -3'
miRNA:   3'- uuuUGUUGCUCugUuGCgCGCU----UAGU- -5'
16441 3' -47 NC_004084.1 + 28883 0.69 0.944049
Target:  5'- --cGCAGCGAGAUcuCGCcGCGggUg- -3'
miRNA:   3'- uuuUGUUGCUCUGuuGCG-CGCuuAgu -5'
16441 3' -47 NC_004084.1 + 41901 0.7 0.914423
Target:  5'- --cACGACGAccGCGGCGCGCG-AUCGc -3'
miRNA:   3'- uuuUGUUGCUc-UGUUGCGCGCuUAGU- -5'
16441 3' -47 NC_004084.1 + 41084 0.7 0.914423
Target:  5'- ---uCGACGAGACGAUGCGgGccGUCGc -3'
miRNA:   3'- uuuuGUUGCUCUGUUGCGCgCu-UAGU- -5'
16441 3' -47 NC_004084.1 + 21988 0.75 0.704435
Target:  5'- cAGACGGCGuacgucGACGACGCGCGGAc-- -3'
miRNA:   3'- uUUUGUUGCu-----CUGUUGCGCGCUUagu -5'
16441 3' -47 NC_004084.1 + 779 0.75 0.715881
Target:  5'- -cGGCucguCGAGGCGACGCGCGAccUCGa -3'
miRNA:   3'- uuUUGuu--GCUCUGUUGCGCGCUu-AGU- -5'
16441 3' -47 NC_004084.1 + 46991 0.75 0.715881
Target:  5'- cGAACuuCGAGACGAC-CGCGAGUUc -3'
miRNA:   3'- uUUUGuuGCUCUGUUGcGCGCUUAGu -5'
16441 3' -47 NC_004084.1 + 51158 0.72 0.860055
Target:  5'- gGAGGCGAuCGAGACGgucgccgagcACGCGCcGAUCGu -3'
miRNA:   3'- -UUUUGUU-GCUCUGU----------UGCGCGcUUAGU- -5'
16441 3' -47 NC_004084.1 + 43333 0.71 0.868694
Target:  5'- -cGACGACGAGugGACGgucucgaaCGcCGAGUCGa -3'
miRNA:   3'- uuUUGUUGCUCugUUGC--------GC-GCUUAGU- -5'
16441 3' -47 NC_004084.1 + 56445 0.71 0.885127
Target:  5'- cGAACGACGAucucGACGGCGCGCucucGGUCu -3'
miRNA:   3'- uUUUGUUGCU----CUGUUGCGCGc---UUAGu -5'
16441 3' -47 NC_004084.1 + 54172 0.71 0.892906
Target:  5'- aGAAGCAACGAGGCGACcaCGuCGggUgGg -3'
miRNA:   3'- -UUUUGUUGCUCUGUUGc-GC-GCuuAgU- -5'
16441 3' -47 NC_004084.1 + 6425 0.71 0.900385
Target:  5'- cGGAUGACGAGACGugGUGCGc---- -3'
miRNA:   3'- uUUUGUUGCUCUGUugCGCGCuuagu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.