miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16441 3' -47 NC_004084.1 + 779 0.75 0.715881
Target:  5'- -cGGCucguCGAGGCGACGCGCGAccUCGa -3'
miRNA:   3'- uuUUGuu--GCUCUGUUGCGCGCUu-AGU- -5'
16441 3' -47 NC_004084.1 + 3565 0.75 0.681316
Target:  5'- aGGAGCAu---GugAACGCGCGAAUCAa -3'
miRNA:   3'- -UUUUGUugcuCugUUGCGCGCUUAGU- -5'
16441 3' -47 NC_004084.1 + 5639 0.67 0.98541
Target:  5'- uGAAGCAcuCGAGGCuGGCGaGCGGAUCc -3'
miRNA:   3'- -UUUUGUu-GCUCUG-UUGCgCGCUUAGu -5'
16441 3' -47 NC_004084.1 + 6425 0.71 0.900385
Target:  5'- cGGAUGACGAGACGugGUGCGc---- -3'
miRNA:   3'- uUUUGUUGCUCUGUugCGCGCuuagu -5'
16441 3' -47 NC_004084.1 + 8965 0.67 0.98334
Target:  5'- -cGGCGACGaAGACGGCGgGaCGAGggCAg -3'
miRNA:   3'- uuUUGUUGC-UCUGUUGCgC-GCUUa-GU- -5'
16441 3' -47 NC_004084.1 + 10371 0.66 0.991792
Target:  5'- cGAACGACGAGagucgagcagGCGAUcgaGCGCGAAg-- -3'
miRNA:   3'- uUUUGUUGCUC----------UGUUG---CGCGCUUagu -5'
16441 3' -47 NC_004084.1 + 12089 0.67 0.980815
Target:  5'- cGAGCGACGAgGACAugGgaaugauCGCGAacggaGUCAa -3'
miRNA:   3'- uUUUGUUGCU-CUGUugC-------GCGCU-----UAGU- -5'
16441 3' -47 NC_004084.1 + 19317 0.66 0.988956
Target:  5'- -cGACGACGAu-CGACGgGCGAcuGUCu -3'
miRNA:   3'- uuUUGUUGCUcuGUUGCgCGCU--UAGu -5'
16441 3' -47 NC_004084.1 + 20903 0.66 0.988796
Target:  5'- --uACGACGAGGacaucauCGACGUcCGAAUCGa -3'
miRNA:   3'- uuuUGUUGCUCU-------GUUGCGcGCUUAGU- -5'
16441 3' -47 NC_004084.1 + 21988 0.75 0.704435
Target:  5'- cAGACGGCGuacgucGACGACGCGCGGAc-- -3'
miRNA:   3'- uUUUGUUGCu-----CUGUUGCGCGCUUagu -5'
16441 3' -47 NC_004084.1 + 22802 0.66 0.987278
Target:  5'- cGAAGCGuCGAGAgGGCGUcaCGGAUCGa -3'
miRNA:   3'- -UUUUGUuGCUCUgUUGCGc-GCUUAGU- -5'
16441 3' -47 NC_004084.1 + 24348 0.66 0.987278
Target:  5'- uGAGCAACGcGACcACGCuCGAGUUc -3'
miRNA:   3'- uUUUGUUGCuCUGuUGCGcGCUUAGu -5'
16441 3' -47 NC_004084.1 + 25364 0.67 0.978544
Target:  5'- cGAAACGgauCGAcGugAGCGC-CGAGUCAg -3'
miRNA:   3'- -UUUUGUu--GCU-CugUUGCGcGCUUAGU- -5'
16441 3' -47 NC_004084.1 + 26364 0.66 0.987278
Target:  5'- cGAACAGCGAGu---CGCGUucgGGAUCGu -3'
miRNA:   3'- uUUUGUUGCUCuguuGCGCG---CUUAGU- -5'
16441 3' -47 NC_004084.1 + 26994 0.68 0.96601
Target:  5'- ----gAACGAGACAACGCGauccUCAc -3'
miRNA:   3'- uuuugUUGCUCUGUUGCGCgcuuAGU- -5'
16441 3' -47 NC_004084.1 + 28552 0.73 0.813005
Target:  5'- -uGACGACGAGAuCAcCGCGUGGAcgaUCAg -3'
miRNA:   3'- uuUUGUUGCUCU-GUuGCGCGCUU---AGU- -5'
16441 3' -47 NC_004084.1 + 28709 0.66 0.991792
Target:  5'- cAGACGACGcgacucagccaGGACAGCGUccGCGAccgcGUCGc -3'
miRNA:   3'- uUUUGUUGC-----------UCUGUUGCG--CGCU----UAGU- -5'
16441 3' -47 NC_004084.1 + 28883 0.69 0.944049
Target:  5'- --cGCAGCGAGAUcuCGCcGCGggUg- -3'
miRNA:   3'- uuuUGUUGCUCUGuuGCG-CGCuuAgu -5'
16441 3' -47 NC_004084.1 + 28956 0.69 0.94904
Target:  5'- cGAGCGcgucuACGAGAaaaucuacCAGCGCGCGAccgacGUCGg -3'
miRNA:   3'- uUUUGU-----UGCUCU--------GUUGCGCGCU-----UAGU- -5'
16441 3' -47 NC_004084.1 + 29540 0.66 0.990456
Target:  5'- --cGCGGCGAGAUcuCGCuGCGGAa-- -3'
miRNA:   3'- uuuUGUUGCUCUGuuGCG-CGCUUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.