miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 3' -54.3 NC_004084.1 + 49352 0.66 0.832833
Target:  5'- uCGAGgUGA--UCGUCGACGucgCCCGa -3'
miRNA:   3'- uGCUCaACUagGGCAGCUGCua-GGGC- -5'
16453 3' -54.3 NC_004084.1 + 18986 0.66 0.831949
Target:  5'- gGCGGGgaagucguaGGUCCCGcUGGCGGggugggaUCCCGg -3'
miRNA:   3'- -UGCUCaa-------CUAGGGCaGCUGCU-------AGGGC- -5'
16453 3' -54.3 NC_004084.1 + 18891 0.66 0.830175
Target:  5'- cACGAGgaGAUCCuCGagGACGucgcgaacgaugacGUCCUGg -3'
miRNA:   3'- -UGCUCaaCUAGG-GCagCUGC--------------UAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 9053 0.66 0.823903
Target:  5'- aGCGGGUaGAgUCgggcgaCGUCGACGAUCaCCu -3'
miRNA:   3'- -UGCUCAaCU-AGg-----GCAGCUGCUAG-GGc -5'
16453 3' -54.3 NC_004084.1 + 5655 0.66 0.814775
Target:  5'- gGCGAGcgGAUCCagaaagccacCGUCGACGAga-CGg -3'
miRNA:   3'- -UGCUCaaCUAGG----------GCAGCUGCUaggGC- -5'
16453 3' -54.3 NC_004084.1 + 27648 0.67 0.776499
Target:  5'- uCGAGggGAUgCCGcCGGgGAUCCgGu -3'
miRNA:   3'- uGCUCaaCUAgGGCaGCUgCUAGGgC- -5'
16453 3' -54.3 NC_004084.1 + 53718 0.67 0.776499
Target:  5'- uCGA--UGAUCUCGUCGGCucGGUCCuCGa -3'
miRNA:   3'- uGCUcaACUAGGGCAGCUG--CUAGG-GC- -5'
16453 3' -54.3 NC_004084.1 + 21396 0.67 0.776499
Target:  5'- uCGGGcaUGAUCCgGUCGACG-UCCa- -3'
miRNA:   3'- uGCUCa-ACUAGGgCAGCUGCuAGGgc -5'
16453 3' -54.3 NC_004084.1 + 32030 0.67 0.76654
Target:  5'- uCGGGUUcGAggaCCUcuaCGACGAUCCCGa -3'
miRNA:   3'- uGCUCAA-CUa--GGGca-GCUGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 35051 0.67 0.756446
Target:  5'- cGCGAcg-GAUCCgaaCGUCGACGucgaCCCGg -3'
miRNA:   3'- -UGCUcaaCUAGG---GCAGCUGCua--GGGC- -5'
16453 3' -54.3 NC_004084.1 + 23185 0.67 0.75033
Target:  5'- -aGAGgUGGUCgaCGUCGAucgcgaucgucggcuCGAUCCCGa -3'
miRNA:   3'- ugCUCaACUAGg-GCAGCU---------------GCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 1516 0.67 0.73486
Target:  5'- gACGAGgaccUCuacaccgCUGUCGACGAUCCCu -3'
miRNA:   3'- -UGCUCaacuAG-------GGCAGCUGCUAGGGc -5'
16453 3' -54.3 NC_004084.1 + 52972 0.68 0.725467
Target:  5'- cGCGAGUgcgcUGGUCgCCGaUCG-CGAUCCa- -3'
miRNA:   3'- -UGCUCA----ACUAG-GGC-AGCuGCUAGGgc -5'
16453 3' -54.3 NC_004084.1 + 12837 0.68 0.71283
Target:  5'- aGCGGGUUGuugaacgcgaaCCCGUCGGCGuacUCCGc -3'
miRNA:   3'- -UGCUCAACua---------GGGCAGCUGCua-GGGC- -5'
16453 3' -54.3 NC_004084.1 + 8055 0.68 0.704343
Target:  5'- cGCGGcGUUGAUCUCGaaGAUGucgCCCGg -3'
miRNA:   3'- -UGCU-CAACUAGGGCagCUGCua-GGGC- -5'
16453 3' -54.3 NC_004084.1 + 49549 0.68 0.704343
Target:  5'- aGCG-GUUGGUCCguCGUCGACGuaCUCGa -3'
miRNA:   3'- -UGCuCAACUAGG--GCAGCUGCuaGGGC- -5'
16453 3' -54.3 NC_004084.1 + 26002 0.69 0.661355
Target:  5'- gACGAGUgcGAgCUCGUCGACGGgaCCGa -3'
miRNA:   3'- -UGCUCAa-CUaGGGCAGCUGCUagGGC- -5'
16453 3' -54.3 NC_004084.1 + 25617 0.69 0.650516
Target:  5'- uACGAGUauAUCCCucGUCGAagaCGAUCUCGc -3'
miRNA:   3'- -UGCUCAacUAGGG--CAGCU---GCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 31162 0.69 0.650516
Target:  5'- cGCGA---GAUCUCGUCGagcGCGGUUCCGg -3'
miRNA:   3'- -UGCUcaaCUAGGGCAGC---UGCUAGGGC- -5'
16453 3' -54.3 NC_004084.1 + 49606 0.69 0.650516
Target:  5'- gGCGAGU---UCgCCGUCGACGGagaUCUCGu -3'
miRNA:   3'- -UGCUCAacuAG-GGCAGCUGCU---AGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.