miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 5' -51.1 NC_004084.1 + 40992 1.11 0.002611
Target:  5'- cGACGAGUUCCGGAACGAGAUCAACCGg -3'
miRNA:   3'- -CUGCUCAAGGCCUUGCUCUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 42322 0.76 0.439679
Target:  5'- cGACGAccgUCGGGACGAGAUCGACg- -3'
miRNA:   3'- -CUGCUcaaGGCCUUGCUCUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 55365 0.76 0.449588
Target:  5'- cGACGAGUUCCucgaGGGugGcGAUCAucGCCGu -3'
miRNA:   3'- -CUGCUCAAGG----CCUugCuCUAGU--UGGC- -5'
16453 5' -51.1 NC_004084.1 + 36075 0.75 0.45962
Target:  5'- cGACGAGgaCCGcGACGAGGUC-GCCGu -3'
miRNA:   3'- -CUGCUCaaGGCcUUGCUCUAGuUGGC- -5'
16453 5' -51.1 NC_004084.1 + 2065 0.75 0.480032
Target:  5'- gGugGA--UCCGugaGGACGAGGUCAACCGa -3'
miRNA:   3'- -CugCUcaAGGC---CUUGCUCUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 29785 0.74 0.508266
Target:  5'- cGACGGGUcggcguacaccuacUCCGGccgcuACGAGAUCA-CCGa -3'
miRNA:   3'- -CUGCUCA--------------AGGCCu----UGCUCUAGUuGGC- -5'
16453 5' -51.1 NC_004084.1 + 7979 0.73 0.595385
Target:  5'- gGACGAGgcgagUGGAACGAGAacgaauccgacgugUCGACCGg -3'
miRNA:   3'- -CUGCUCaag--GCCUUGCUCU--------------AGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 28872 0.72 0.632159
Target:  5'- gGugGGcGUUCCGcAGCGAGAUCucGCCGc -3'
miRNA:   3'- -CugCU-CAAGGCcUUGCUCUAGu-UGGC- -5'
16453 5' -51.1 NC_004084.1 + 41712 0.72 0.632159
Target:  5'- cGAUGAGUUCCuGGACGAucgCGACCa -3'
miRNA:   3'- -CUGCUCAAGGcCUUGCUcuaGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 17544 0.72 0.632159
Target:  5'- gGACGuguGGUUCCGGAACGucGAUCucgacGGCCa -3'
miRNA:   3'- -CUGC---UCAAGGCCUUGCu-CUAG-----UUGGc -5'
16453 5' -51.1 NC_004084.1 + 45669 0.72 0.676693
Target:  5'- cGACGAGacggUCGGcgucGACGAGAUCGugCGc -3'
miRNA:   3'- -CUGCUCaa--GGCC----UUGCUCUAGUugGC- -5'
16453 5' -51.1 NC_004084.1 + 37219 0.71 0.687746
Target:  5'- uGACGAucuccuaCCGGGGCGAGAagAACCGc -3'
miRNA:   3'- -CUGCUcaa----GGCCUUGCUCUagUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 44463 0.71 0.709675
Target:  5'- cGACcGGUUCCGGAGCGAGuuugaGGCUc -3'
miRNA:   3'- -CUGcUCAAGGCCUUGCUCuag--UUGGc -5'
16453 5' -51.1 NC_004084.1 + 36209 0.71 0.709675
Target:  5'- aGGCGGGgaaccucUCCGGucuccuCGAGggCAACCGg -3'
miRNA:   3'- -CUGCUCa------AGGCCuu----GCUCuaGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 29244 0.71 0.730219
Target:  5'- gGGCGAGUUCCGcuGGACGAacggcccGcgCGACCa -3'
miRNA:   3'- -CUGCUCAAGGC--CUUGCU-------CuaGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 38490 0.71 0.731291
Target:  5'- gGACGAG--CUGGu-CGAGAUCGGCCu -3'
miRNA:   3'- -CUGCUCaaGGCCuuGCUCUAGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 40828 0.71 0.731291
Target:  5'- cGACGuccacGUUCCGGAGguCGAGGUCcccgaacuGGCCGu -3'
miRNA:   3'- -CUGCu----CAAGGCCUU--GCUCUAG--------UUGGC- -5'
16453 5' -51.1 NC_004084.1 + 17447 0.7 0.782328
Target:  5'- -uCGGGUucgUCCGGGaucgucgACGGGAUCAACuCGu -3'
miRNA:   3'- cuGCUCA---AGGCCU-------UGCUCUAGUUG-GC- -5'
16453 5' -51.1 NC_004084.1 + 11994 0.69 0.803104
Target:  5'- cGACGAGUUCCccAGCGAcGUCAACa- -3'
miRNA:   3'- -CUGCUCAAGGccUUGCUcUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 28911 0.69 0.803104
Target:  5'- aGCGGGUgugcCCGaGAGCGAcGUCGGCCu -3'
miRNA:   3'- cUGCUCAa---GGC-CUUGCUcUAGUUGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.