Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
16453 | 5' | -51.1 | NC_004084.1 | + | 20074 | 0.67 | 0.881028 |
Target: 5'- cGACGAcg-CCGGAGCGAaccggaaGA-CGACCGu -3' miRNA: 3'- -CUGCUcaaGGCCUUGCU-------CUaGUUGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 11994 | 0.69 | 0.803104 |
Target: 5'- cGACGAGUUCCccAGCGAcGUCAACa- -3' miRNA: 3'- -CUGCUCAAGGccUUGCUcUAGUUGgc -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 1107 | 0.69 | 0.822138 |
Target: 5'- --gGAGUUCUGGAA-GAuGGUCGAUCGg -3' miRNA: 3'- cugCUCAAGGCCUUgCU-CUAGUUGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 5356 | 0.69 | 0.822138 |
Target: 5'- cGGCGAGgaCUGGGACGAucUCGACg- -3' miRNA: 3'- -CUGCUCaaGGCCUUGCUcuAGUUGgc -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 5507 | 0.68 | 0.840351 |
Target: 5'- cGACGAGUcguUCCuaguGGGugGCGAGGaacUCGACCa -3' miRNA: 3'- -CUGCUCA---AGG----CCU--UGCUCU---AGUUGGc -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 53934 | 0.68 | 0.849124 |
Target: 5'- cACGAGggCCGGAAgGAGcUCGcgaaGCUGa -3' miRNA: 3'- cUGCUCaaGGCCUUgCUCuAGU----UGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 7853 | 0.68 | 0.85682 |
Target: 5'- gGACGAGUUCUGG-ACGGacauGAUCGAggagacuCCGc -3' miRNA: 3'- -CUGCUCAAGGCCuUGCU----CUAGUU-------GGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 36302 | 0.68 | 0.857663 |
Target: 5'- -cCGAGUaCCGGGACGcccuGAUCGAugcCCGu -3' miRNA: 3'- cuGCUCAaGGCCUUGCu---CUAGUU---GGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 30476 | 0.68 | 0.874006 |
Target: 5'- uACGAGgcgcugCCGGAcucCGAGAUCGAUuCGg -3' miRNA: 3'- cUGCUCaa----GGCCUu--GCUCUAGUUG-GC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 28911 | 0.69 | 0.803104 |
Target: 5'- aGCGGGUgugcCCGaGAGCGAcGUCGGCCu -3' miRNA: 3'- cUGCUCAa---GGC-CUUGCUcUAGUUGGc -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 40828 | 0.71 | 0.731291 |
Target: 5'- cGACGuccacGUUCCGGAGguCGAGGUCcccgaacuGGCCGu -3' miRNA: 3'- -CUGCu----CAAGGCCUU--GCUCUAG--------UUGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 38490 | 0.71 | 0.731291 |
Target: 5'- gGACGAG--CUGGu-CGAGAUCGGCCu -3' miRNA: 3'- -CUGCUCaaGGCCuuGCUCUAGUUGGc -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 42322 | 0.76 | 0.439679 |
Target: 5'- cGACGAccgUCGGGACGAGAUCGACg- -3' miRNA: 3'- -CUGCUcaaGGCCUUGCUCUAGUUGgc -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 36075 | 0.75 | 0.45962 |
Target: 5'- cGACGAGgaCCGcGACGAGGUC-GCCGu -3' miRNA: 3'- -CUGCUCaaGGCcUUGCUCUAGuUGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 7979 | 0.73 | 0.595385 |
Target: 5'- gGACGAGgcgagUGGAACGAGAacgaauccgacgugUCGACCGg -3' miRNA: 3'- -CUGCUCaag--GCCUUGCUCU--------------AGUUGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 28872 | 0.72 | 0.632159 |
Target: 5'- gGugGGcGUUCCGcAGCGAGAUCucGCCGc -3' miRNA: 3'- -CugCU-CAAGGCcUUGCUCUAGu-UGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 45669 | 0.72 | 0.676693 |
Target: 5'- cGACGAGacggUCGGcgucGACGAGAUCGugCGc -3' miRNA: 3'- -CUGCUCaa--GGCC----UUGCUCUAGUugGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 37219 | 0.71 | 0.687746 |
Target: 5'- uGACGAucuccuaCCGGGGCGAGAagAACCGc -3' miRNA: 3'- -CUGCUcaa----GGCCUUGCUCUagUUGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 36209 | 0.71 | 0.709675 |
Target: 5'- aGGCGGGgaaccucUCCGGucuccuCGAGggCAACCGg -3' miRNA: 3'- -CUGCUCa------AGGCCuu----GCUCuaGUUGGC- -5' |
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16453 | 5' | -51.1 | NC_004084.1 | + | 44463 | 0.71 | 0.709675 |
Target: 5'- cGACcGGUUCCGGAGCGAGuuugaGGCUc -3' miRNA: 3'- -CUGcUCAAGGCCUUGCUCuag--UUGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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