miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16453 5' -51.1 NC_004084.1 + 1107 0.69 0.822138
Target:  5'- --gGAGUUCUGGAA-GAuGGUCGAUCGg -3'
miRNA:   3'- cugCUCAAGGCCUUgCU-CUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 2065 0.75 0.480032
Target:  5'- gGugGA--UCCGugaGGACGAGGUCAACCGa -3'
miRNA:   3'- -CugCUcaAGGC---CUUGCUCUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 5041 0.67 0.903559
Target:  5'- cGACGAGggCCGGAucuUGuagcGGUCGGCgGa -3'
miRNA:   3'- -CUGCUCaaGGCCUu--GCu---CUAGUUGgC- -5'
16453 5' -51.1 NC_004084.1 + 5356 0.69 0.822138
Target:  5'- cGGCGAGgaCUGGGACGAucUCGACg- -3'
miRNA:   3'- -CUGCUCaaGGCCUUGCUcuAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 5507 0.68 0.840351
Target:  5'- cGACGAGUcguUCCuaguGGGugGCGAGGaacUCGACCa -3'
miRNA:   3'- -CUGCUCA---AGG----CCU--UGCUCU---AGUUGGc -5'
16453 5' -51.1 NC_004084.1 + 7853 0.68 0.85682
Target:  5'- gGACGAGUUCUGG-ACGGacauGAUCGAggagacuCCGc -3'
miRNA:   3'- -CUGCUCAAGGCCuUGCU----CUAGUU-------GGC- -5'
16453 5' -51.1 NC_004084.1 + 7979 0.73 0.595385
Target:  5'- gGACGAGgcgagUGGAACGAGAacgaauccgacgugUCGACCGg -3'
miRNA:   3'- -CUGCUCaag--GCCUUGCUCU--------------AGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 8195 0.69 0.812719
Target:  5'- aGugGGGUUCgCGGAuggcguCGAGGUUgAACCa -3'
miRNA:   3'- -CugCUCAAG-GCCUu-----GCUCUAG-UUGGc -5'
16453 5' -51.1 NC_004084.1 + 8793 0.66 0.916686
Target:  5'- cGACGGagcCCGGcGACGAGAUCu-CCGu -3'
miRNA:   3'- -CUGCUcaaGGCC-UUGCUCUAGuuGGC- -5'
16453 5' -51.1 NC_004084.1 + 9875 0.66 0.921014
Target:  5'- cGACGAGguucuugaacccugcCCGGGAgaaccCGAGAUCGaacccGCCGa -3'
miRNA:   3'- -CUGCUCaa-------------GGCCUU-----GCUCUAGU-----UGGC- -5'
16453 5' -51.1 NC_004084.1 + 10553 0.68 0.857663
Target:  5'- gGACGAGUagcUCgGGGugGcuGUCGAUCGa -3'
miRNA:   3'- -CUGCUCA---AGgCCUugCucUAGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 11994 0.69 0.803104
Target:  5'- cGACGAGUUCCccAGCGAcGUCAACa- -3'
miRNA:   3'- -CUGCUCAAGGccUUGCUcUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 12384 0.66 0.939542
Target:  5'- aGGCGAGggUCCGGuuAACGuccuGAUCGAUg- -3'
miRNA:   3'- -CUGCUCa-AGGCC--UUGCu---CUAGUUGgc -5'
16453 5' -51.1 NC_004084.1 + 17447 0.7 0.782328
Target:  5'- -uCGGGUucgUCCGGGaucgucgACGGGAUCAACuCGu -3'
miRNA:   3'- cuGCUCA---AGGCCU-------UGCUCUAGUUG-GC- -5'
16453 5' -51.1 NC_004084.1 + 17544 0.72 0.632159
Target:  5'- gGACGuguGGUUCCGGAACGucGAUCucgacGGCCa -3'
miRNA:   3'- -CUGC---UCAAGGCCUUGCu-CUAG-----UUGGc -5'
16453 5' -51.1 NC_004084.1 + 18692 0.67 0.903559
Target:  5'- cGACGAGgaCUGGGGCcAGAagAGCUGg -3'
miRNA:   3'- -CUGCUCaaGGCCUUGcUCUagUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 19630 0.67 0.889321
Target:  5'- aGCGAGUUCCGGcucGACGAcGAUgGcguCCa -3'
miRNA:   3'- cUGCUCAAGGCC---UUGCU-CUAgUu--GGc -5'
16453 5' -51.1 NC_004084.1 + 20074 0.67 0.881028
Target:  5'- cGACGAcg-CCGGAGCGAaccggaaGA-CGACCGu -3'
miRNA:   3'- -CUGCUcaaGGCCUUGCU-------CUaGUUGGC- -5'
16453 5' -51.1 NC_004084.1 + 21175 0.67 0.896577
Target:  5'- cGACGAGcgCCGGGACGcGGUUcuucucGCCc -3'
miRNA:   3'- -CUGCUCaaGGCCUUGCuCUAGu-----UGGc -5'
16453 5' -51.1 NC_004084.1 + 22335 0.66 0.939542
Target:  5'- cGACGAGgaacUCGaGGGCGAGAaCuACCGg -3'
miRNA:   3'- -CUGCUCaa--GGC-CUUGCUCUaGuUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.