miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16468 5' -55.3 NC_004084.1 + 45986 1.1 0.00117
Target:  5'- aCGUCGACGCGAUCAUGGACGGCGAGAa -3'
miRNA:   3'- -GCAGCUGCGCUAGUACCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 2412 0.82 0.102094
Target:  5'- aGUCGAgggcaaaguaCGCGAUCGUGGGCGGUGAa- -3'
miRNA:   3'- gCAGCU----------GCGCUAGUACCUGCCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 1024 0.81 0.12053
Target:  5'- aCGUCGACGCGAUCggGGGCGcGCucGAg -3'
miRNA:   3'- -GCAGCUGCGCUAGuaCCUGC-CGcuCU- -5'
16468 5' -55.3 NC_004084.1 + 28295 0.77 0.206307
Target:  5'- aGUCu-CGCGAUCG-GGGCGGCGAGu -3'
miRNA:   3'- gCAGcuGCGCUAGUaCCUGCCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 12446 0.76 0.245193
Target:  5'- gCGUCGACGUgccGAUCGucgaauuugaucucUGGACGGgGAGGu -3'
miRNA:   3'- -GCAGCUGCG---CUAGU--------------ACCUGCCgCUCU- -5'
16468 5' -55.3 NC_004084.1 + 1180 0.75 0.294279
Target:  5'- uCGcCGACGCGGUCGUGGACGuagucgcguaaGCGGu- -3'
miRNA:   3'- -GCaGCUGCGCUAGUACCUGC-----------CGCUcu -5'
16468 5' -55.3 NC_004084.1 + 11654 0.74 0.316569
Target:  5'- aCGUCGACGuCGGUCGgcgacgacuACGGCGAGGa -3'
miRNA:   3'- -GCAGCUGC-GCUAGUacc------UGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 9208 0.72 0.408882
Target:  5'- cCGuUCGACGCGAaggcgUUcgGGugGaGCGAGGa -3'
miRNA:   3'- -GC-AGCUGCGCU-----AGuaCCugC-CGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 48895 0.72 0.418071
Target:  5'- aCGaCGGCagGCGAUCAUGGAgGucuGCGAGAa -3'
miRNA:   3'- -GCaGCUG--CGCUAGUACCUgC---CGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 54239 0.71 0.446371
Target:  5'- aCGUCGGaGCGAUCAgcgccGuCGGCGAGGu -3'
miRNA:   3'- -GCAGCUgCGCUAGUac---CuGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 19089 0.71 0.446371
Target:  5'- aCGUCGACGuCGAUCAgcaccGCGGCGGc- -3'
miRNA:   3'- -GCAGCUGC-GCUAGUacc--UGCCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 33440 0.71 0.465819
Target:  5'- gCGUCGAUgaagGCGAUgAUGGGCugGGCGAa- -3'
miRNA:   3'- -GCAGCUG----CGCUAgUACCUG--CCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 56897 0.71 0.474713
Target:  5'- uCGUCGACaGCGGUguagagguccucgUcgGGACGGCGGa- -3'
miRNA:   3'- -GCAGCUG-CGCUA-------------GuaCCUGCCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 41445 0.71 0.475707
Target:  5'- gGcCGACGCGAUCgaggucuugcaGUGGccCGGCGAGu -3'
miRNA:   3'- gCaGCUGCGCUAG-----------UACCu-GCCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 24803 0.71 0.493762
Target:  5'- -cUCGuacCGCGAUUAccucauccuuagGGACGGCGAGAu -3'
miRNA:   3'- gcAGCu--GCGCUAGUa-----------CCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 50123 0.7 0.526599
Target:  5'- aGUCGAggccCGCGAUCGUccGGAUGaCGAGGu -3'
miRNA:   3'- gCAGCU----GCGCUAGUA--CCUGCcGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 805 0.7 0.537031
Target:  5'- gGUCGAgGCGAUCGUGGA-GGUc--- -3'
miRNA:   3'- gCAGCUgCGCUAGUACCUgCCGcucu -5'
16468 5' -55.3 NC_004084.1 + 54513 0.69 0.558101
Target:  5'- -uUCGACGacuacaacCGG-CAccUGGACGGCGAGAu -3'
miRNA:   3'- gcAGCUGC--------GCUaGU--ACCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 14093 0.69 0.568724
Target:  5'- aCGUCGAUGUcGUCGUGG-CGGCa--- -3'
miRNA:   3'- -GCAGCUGCGcUAGUACCuGCCGcucu -5'
16468 5' -55.3 NC_004084.1 + 39046 0.69 0.590113
Target:  5'- gGUCGAUGCGAUCG-GGACGuuguCGAu- -3'
miRNA:   3'- gCAGCUGCGCUAGUaCCUGCc---GCUcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.