miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16468 5' -55.3 NC_004084.1 + 805 0.7 0.537031
Target:  5'- gGUCGAgGCGAUCGUGGA-GGUc--- -3'
miRNA:   3'- gCAGCUgCGCUAGUACCUgCCGcucu -5'
16468 5' -55.3 NC_004084.1 + 1024 0.81 0.12053
Target:  5'- aCGUCGACGCGAUCggGGGCGcGCucGAg -3'
miRNA:   3'- -GCAGCUGCGCUAGuaCCUGC-CGcuCU- -5'
16468 5' -55.3 NC_004084.1 + 1120 0.68 0.62243
Target:  5'- uCGUCGAgGaGGUCcUGGAUGGCGcGGu -3'
miRNA:   3'- -GCAGCUgCgCUAGuACCUGCCGCuCU- -5'
16468 5' -55.3 NC_004084.1 + 1180 0.75 0.294279
Target:  5'- uCGcCGACGCGGUCGUGGACGuagucgcguaaGCGGu- -3'
miRNA:   3'- -GCaGCUGCGCUAGUACCUGC-----------CGCUcu -5'
16468 5' -55.3 NC_004084.1 + 2172 0.69 0.600862
Target:  5'- aCGUCGAUGCagucgcucGAgcgCcgGGACGGCaAGAu -3'
miRNA:   3'- -GCAGCUGCG--------CUa--GuaCCUGCCGcUCU- -5'
16468 5' -55.3 NC_004084.1 + 2412 0.82 0.102094
Target:  5'- aGUCGAgggcaaaguaCGCGAUCGUGGGCGGUGAa- -3'
miRNA:   3'- gCAGCU----------GCGCUAGUACCUGCCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 2451 0.66 0.74978
Target:  5'- cCGUCGACGaGAUCcgagccacgcUGGAUcGCGAGGa -3'
miRNA:   3'- -GCAGCUGCgCUAGu---------ACCUGcCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 3179 0.66 0.789458
Target:  5'- uCGUCGACgGCGAggaCGUGaacgaGGCGGUGGcGAa -3'
miRNA:   3'- -GCAGCUG-CGCUa--GUAC-----CUGCCGCU-CU- -5'
16468 5' -55.3 NC_004084.1 + 3496 0.66 0.779749
Target:  5'- aCGUCGACaGUGcuggccagcAUCAUGGAgUGGUGAcGAu -3'
miRNA:   3'- -GCAGCUG-CGC---------UAGUACCU-GCCGCU-CU- -5'
16468 5' -55.3 NC_004084.1 + 5341 0.67 0.718775
Target:  5'- aCGUCG-C-CGAgc--GGGCGGCGAGGa -3'
miRNA:   3'- -GCAGCuGcGCUaguaCCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 5504 0.68 0.632151
Target:  5'- aGUCGACGa-GUCguuccuaGUGGGUGGCGAGGa -3'
miRNA:   3'- gCAGCUGCgcUAG-------UACCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 6252 0.66 0.779749
Target:  5'- --cCGACGCGGUCGacgaugagcacUGGccccCGGCGGGc -3'
miRNA:   3'- gcaGCUGCGCUAGU-----------ACCu---GCCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 7059 0.66 0.769893
Target:  5'- uCGUCuuGGcCGCGAuccagcgguUCGUGGACaaucagGGCGAGGc -3'
miRNA:   3'- -GCAG--CU-GCGCU---------AGUACCUG------CCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 8408 0.67 0.718775
Target:  5'- cCGcUCGgcgacaACGUGAUCAUGGGCgaGGCGGa- -3'
miRNA:   3'- -GC-AGC------UGCGCUAGUACCUG--CCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 9157 0.66 0.739546
Target:  5'- cCGUCGcCGUGA-CGUGGACGuCGAu- -3'
miRNA:   3'- -GCAGCuGCGCUaGUACCUGCcGCUcu -5'
16468 5' -55.3 NC_004084.1 + 9208 0.72 0.408882
Target:  5'- cCGuUCGACGCGAaggcgUUcgGGugGaGCGAGGa -3'
miRNA:   3'- -GC-AGCUGCGCU-----AGuaCCugC-CGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 10459 0.66 0.789458
Target:  5'- cCG-CGAgGCGAUCcaGGACGGCcuGAc -3'
miRNA:   3'- -GCaGCUgCGCUAGuaCCUGCCGcuCU- -5'
16468 5' -55.3 NC_004084.1 + 11654 0.74 0.316569
Target:  5'- aCGUCGACGuCGGUCGgcgacgacuACGGCGAGGa -3'
miRNA:   3'- -GCAGCUGC-GCUAGUacc------UGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 12446 0.76 0.245193
Target:  5'- gCGUCGACGUgccGAUCGucgaauuugaucucUGGACGGgGAGGu -3'
miRNA:   3'- -GCAGCUGCG---CUAGU--------------ACCUGCCgCUCU- -5'
16468 5' -55.3 NC_004084.1 + 14093 0.69 0.568724
Target:  5'- aCGUCGAUGUcGUCGUGG-CGGCa--- -3'
miRNA:   3'- -GCAGCUGCGcUAGUACCuGCCGcucu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.