miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16468 5' -55.3 NC_004084.1 + 8408 0.67 0.718775
Target:  5'- cCGcUCGgcgacaACGUGAUCAUGGGCgaGGCGGa- -3'
miRNA:   3'- -GC-AGC------UGCGCUAGUACCUG--CCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 45683 0.68 0.637551
Target:  5'- gCGUCGACGaGAUCGUGcGCGGagacaagcaacuccuCGAGGg -3'
miRNA:   3'- -GCAGCUGCgCUAGUACcUGCC---------------GCUCU- -5'
16468 5' -55.3 NC_004084.1 + 41311 0.68 0.64403
Target:  5'- aCGUCGAgGCuAUCgAUGGAgGGCaGGAc -3'
miRNA:   3'- -GCAGCUgCGcUAG-UACCUgCCGcUCU- -5'
16468 5' -55.3 NC_004084.1 + 49026 0.68 0.64403
Target:  5'- gCGUCGACGUGAUgG-GGAUGccCGAGGa -3'
miRNA:   3'- -GCAGCUGCGCUAgUaCCUGCc-GCUCU- -5'
16468 5' -55.3 NC_004084.1 + 16434 0.68 0.65913
Target:  5'- gCGUCGAUGUGGgcaucgguuacgggCAUGGGC-GCGAGc -3'
miRNA:   3'- -GCAGCUGCGCUa-------------GUACCUGcCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 52588 0.68 0.665588
Target:  5'- gCGgCGGCGUGGUCc-GGugGGuCGAGGc -3'
miRNA:   3'- -GCaGCUGCGCUAGuaCCugCC-GCUCU- -5'
16468 5' -55.3 NC_004084.1 + 39235 0.67 0.687026
Target:  5'- aCGUCGucuACGacAUCGgcaaGGGCGGCGGGAa -3'
miRNA:   3'- -GCAGC---UGCgcUAGUa---CCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 47360 0.67 0.705091
Target:  5'- uCGUCGGCGgccgccccuucgucCGcGUCGUcGACGGCGAGc -3'
miRNA:   3'- -GCAGCUGC--------------GC-UAGUAcCUGCCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 49664 0.67 0.70826
Target:  5'- gGUCGACaUGAUCuccgaAUGGAcCGGCGAc- -3'
miRNA:   3'- gCAGCUGcGCUAG-----UACCU-GCCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 5504 0.68 0.632151
Target:  5'- aGUCGACGa-GUCguuccuaGUGGGUGGCGAGGa -3'
miRNA:   3'- gCAGCUGCgcUAG-------UACCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 53229 0.69 0.608403
Target:  5'- cCGUCGugucaucuacgagcGgGCGGUCGUcGACGGCGAcGAg -3'
miRNA:   3'- -GCAGC--------------UgCGCUAGUAcCUGCCGCU-CU- -5'
16468 5' -55.3 NC_004084.1 + 2172 0.69 0.600862
Target:  5'- aCGUCGAUGCagucgcucGAgcgCcgGGACGGCaAGAu -3'
miRNA:   3'- -GCAGCUGCG--------CUa--GuaCCUGCCGcUCU- -5'
16468 5' -55.3 NC_004084.1 + 2412 0.82 0.102094
Target:  5'- aGUCGAgggcaaaguaCGCGAUCGUGGGCGGUGAa- -3'
miRNA:   3'- gCAGCU----------GCGCUAGUACCUGCCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 28295 0.77 0.206307
Target:  5'- aGUCu-CGCGAUCG-GGGCGGCGAGu -3'
miRNA:   3'- gCAGcuGCGCUAGUaCCUGCCGCUCu -5'
16468 5' -55.3 NC_004084.1 + 11654 0.74 0.316569
Target:  5'- aCGUCGACGuCGGUCGgcgacgacuACGGCGAGGa -3'
miRNA:   3'- -GCAGCUGC-GCUAGUacc------UGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 9208 0.72 0.408882
Target:  5'- cCGuUCGACGCGAaggcgUUcgGGugGaGCGAGGa -3'
miRNA:   3'- -GC-AGCUGCGCU-----AGuaCCugC-CGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 48895 0.72 0.418071
Target:  5'- aCGaCGGCagGCGAUCAUGGAgGucuGCGAGAa -3'
miRNA:   3'- -GCaGCUG--CGCUAGUACCUgC---CGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 19089 0.71 0.446371
Target:  5'- aCGUCGACGuCGAUCAgcaccGCGGCGGc- -3'
miRNA:   3'- -GCAGCUGC-GCUAGUacc--UGCCGCUcu -5'
16468 5' -55.3 NC_004084.1 + 24803 0.71 0.493762
Target:  5'- -cUCGuacCGCGAUUAccucauccuuagGGACGGCGAGAu -3'
miRNA:   3'- gcAGCu--GCGCUAGUa-----------CCUGCCGCUCU- -5'
16468 5' -55.3 NC_004084.1 + 54513 0.69 0.558101
Target:  5'- -uUCGACGacuacaacCGG-CAccUGGACGGCGAGAu -3'
miRNA:   3'- gcAGCUGC--------GCUaGU--ACCUGCCGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.