miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16476 3' -60.3 NC_004084.1 + 49170 1.11 0.000317
Target:  5'- aCGACGACCCCGAGACGCUGGACGCCCu -3'
miRNA:   3'- -GCUGCUGGGGCUCUGCGACCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 437 0.91 0.010265
Target:  5'- aCGGCGACCUCGAGACgGCggaGGACGCCCa -3'
miRNA:   3'- -GCUGCUGGGGCUCUG-CGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 2078 0.79 0.079113
Target:  5'- gGACGAggucaaccgagucacCCUCGAGGCGCUGGGacaUGCCCu -3'
miRNA:   3'- gCUGCU---------------GGGGCUCUGCGACCU---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 48118 0.75 0.133722
Target:  5'- gGACGGCaucugguugCCCGAGAUGUaccGGAUGCCCu -3'
miRNA:   3'- gCUGCUG---------GGGCUCUGCGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 43746 0.75 0.143544
Target:  5'- uCGAgGACCcggCCGGGACGCucgcgggcaucgacUGGGCGCUCg -3'
miRNA:   3'- -GCUgCUGG---GGCUCUGCG--------------ACCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 27727 0.75 0.144675
Target:  5'- uGAgGAgCCaggCGAGACGCUGGucacCGCCCa -3'
miRNA:   3'- gCUgCUgGG---GCUCUGCGACCu---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 16750 0.75 0.148505
Target:  5'- -cGCGGCCUCGAuGACGUUGuuCGCCCg -3'
miRNA:   3'- gcUGCUGGGGCU-CUGCGACcuGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 7810 0.75 0.152426
Target:  5'- uCGACGACCUCGA--CGCUGGAggcaCGCUCc -3'
miRNA:   3'- -GCUGCUGGGGCUcuGCGACCU----GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 22846 0.74 0.156442
Target:  5'- uCGACGGCCUCGuGAUGCUcGACGaacCCCg -3'
miRNA:   3'- -GCUGCUGGGGCuCUGCGAcCUGC---GGG- -5'
16476 3' -60.3 NC_004084.1 + 41199 0.74 0.16476
Target:  5'- -cACGACgCCCGcGACGCUGGcgaaACGCCg -3'
miRNA:   3'- gcUGCUG-GGGCuCUGCGACC----UGCGGg -5'
16476 3' -60.3 NC_004084.1 + 32048 0.74 0.169067
Target:  5'- aCGACGAUCCCGAacgcGAcuCGCUGuucGACGUCCu -3'
miRNA:   3'- -GCUGCUGGGGCU----CU--GCGAC---CUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 22475 0.74 0.173474
Target:  5'- cCGcCGACCCCGGcGACGCcggGGACauGCUCg -3'
miRNA:   3'- -GCuGCUGGGGCU-CUGCGa--CCUG--CGGG- -5'
16476 3' -60.3 NC_004084.1 + 21174 0.73 0.187316
Target:  5'- uCGACGAgCgCCGGGACGC-GGuucuucuCGCCCc -3'
miRNA:   3'- -GCUGCUgG-GGCUCUGCGaCCu------GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 23275 0.73 0.187316
Target:  5'- gGAUGuACCCCGAgGAC-CUcGACGCCCa -3'
miRNA:   3'- gCUGC-UGGGGCU-CUGcGAcCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 29649 0.73 0.192141
Target:  5'- uCGACGACCgCGcGGACaGCUGGuACaugGCCCg -3'
miRNA:   3'- -GCUGCUGGgGC-UCUG-CGACC-UG---CGGG- -5'
16476 3' -60.3 NC_004084.1 + 11127 0.72 0.217931
Target:  5'- gGAUGuCCCaGAGcCGCUGGACGUCg -3'
miRNA:   3'- gCUGCuGGGgCUCuGCGACCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 36254 0.72 0.217931
Target:  5'- uCGACGuCCUCGAGuGCGCcGaGGCGCUCg -3'
miRNA:   3'- -GCUGCuGGGGCUC-UGCGaC-CUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 1680 0.72 0.223432
Target:  5'- gGGCGA-CCUGAucGACGCgaaGGACGUCCg -3'
miRNA:   3'- gCUGCUgGGGCU--CUGCGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 36642 0.72 0.22905
Target:  5'- uGACGGCCCCGAcgucGAUGCcgccgauccccgUGGAacCGUCCa -3'
miRNA:   3'- gCUGCUGGGGCU----CUGCG------------ACCU--GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 8239 0.72 0.234787
Target:  5'- gGGCGACgUCGAGACGaucGACGCCg -3'
miRNA:   3'- gCUGCUGgGGCUCUGCgacCUGCGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.