miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16476 3' -60.3 NC_004084.1 + 298 0.66 0.543732
Target:  5'- aCGACGACCgccgaCGAGAacccgaaGCagGGGCGCg- -3'
miRNA:   3'- -GCUGCUGGg----GCUCUg------CGa-CCUGCGgg -5'
16476 3' -60.3 NC_004084.1 + 437 0.91 0.010265
Target:  5'- aCGGCGACCUCGAGACgGCggaGGACGCCCa -3'
miRNA:   3'- -GCUGCUGGGGCUCUG-CGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 746 0.66 0.493944
Target:  5'- uCGACG--UCgGAGGCGCUGGAC-CaCCa -3'
miRNA:   3'- -GCUGCugGGgCUCUGCGACCUGcG-GG- -5'
16476 3' -60.3 NC_004084.1 + 1680 0.72 0.223432
Target:  5'- gGGCGA-CCUGAucGACGCgaaGGACGUCCg -3'
miRNA:   3'- gCUGCUgGGGCU--CUGCGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 2078 0.79 0.079113
Target:  5'- gGACGAggucaaccgagucacCCUCGAGGCGCUGGGacaUGCCCu -3'
miRNA:   3'- gCUGCU---------------GGGGCUCUGCGACCU---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 2454 0.7 0.320673
Target:  5'- uCGACGAgaUCCGAGccACGCUGGAuCGCg- -3'
miRNA:   3'- -GCUGCUg-GGGCUC--UGCGACCU-GCGgg -5'
16476 3' -60.3 NC_004084.1 + 3476 0.66 0.484231
Target:  5'- --cCGcAUCCCGAGGCGgaGGAU-CCCg -3'
miRNA:   3'- gcuGC-UGGGGCUCUGCgaCCUGcGGG- -5'
16476 3' -60.3 NC_004084.1 + 4923 0.67 0.474611
Target:  5'- aCGACGACUucgCCGucGACGUacUGGAugaCGUCCg -3'
miRNA:   3'- -GCUGCUGG---GGCu-CUGCG--ACCU---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 4967 0.68 0.375868
Target:  5'- aCGACGACCCaCGAGGagaucgGCgGGAC-CCa -3'
miRNA:   3'- -GCUGCUGGG-GCUCUg-----CGaCCUGcGGg -5'
16476 3' -60.3 NC_004084.1 + 5009 0.72 0.240644
Target:  5'- uCGACGAgguCCUCGAGGaGUUGGuagcCGCCCg -3'
miRNA:   3'- -GCUGCU---GGGGCUCUgCGACCu---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 5368 0.71 0.265299
Target:  5'- gGACGAUCUCGAcGuCGaacCUGGGCGUCCa -3'
miRNA:   3'- gCUGCUGGGGCU-CuGC---GACCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 6409 0.67 0.42532
Target:  5'- aGAUGACUUcguugaucggaugaCGAGACG-UGGuGCGCCCg -3'
miRNA:   3'- gCUGCUGGG--------------GCUCUGCgACC-UGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 7300 0.66 0.51363
Target:  5'- gGACGACaacaccgauUCCGAGACGgacaaagcgaUGGAagaCGCCCc -3'
miRNA:   3'- gCUGCUG---------GGGCUCUGCg---------ACCU---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 7810 0.75 0.152426
Target:  5'- uCGACGACCUCGA--CGCUGGAggcaCGCUCc -3'
miRNA:   3'- -GCUGCUGGGGCUcuGCGACCU----GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 8239 0.72 0.234787
Target:  5'- gGGCGACgUCGAGACGaucGACGCCg -3'
miRNA:   3'- gCUGCUGgGGCUCUGCgacCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 8946 0.66 0.51363
Target:  5'- cCGACGACUCCGAGGacaGCgGcGACGaagaCg -3'
miRNA:   3'- -GCUGCUGGGGCUCUg--CGaC-CUGCgg--G- -5'
16476 3' -60.3 NC_004084.1 + 9682 0.67 0.446344
Target:  5'- -uACGAUCCCGAgGAUGa-GGugGUCCu -3'
miRNA:   3'- gcUGCUGGGGCU-CUGCgaCCugCGGG- -5'
16476 3' -60.3 NC_004084.1 + 11127 0.72 0.217931
Target:  5'- gGAUGuCCCaGAGcCGCUGGACGUCg -3'
miRNA:   3'- gCUGCuGGGgCUCuGCGACCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 11843 0.66 0.523593
Target:  5'- aCGACGAUCgCCGcGAUGCc-GAUGCCg -3'
miRNA:   3'- -GCUGCUGG-GGCuCUGCGacCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 12335 0.68 0.41904
Target:  5'- uCGGCGAUCCUGaAGA-GCaggGGACGUUCg -3'
miRNA:   3'- -GCUGCUGGGGC-UCUgCGa--CCUGCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.