miRNA display CGI


Results 1 - 20 of 92 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
16476 3' -60.3 NC_004084.1 + 2454 0.7 0.320673
Target:  5'- uCGACGAgaUCCGAGccACGCUGGAuCGCg- -3'
miRNA:   3'- -GCUGCUg-GGGCUC--UGCGACCU-GCGgg -5'
16476 3' -60.3 NC_004084.1 + 36642 0.72 0.22905
Target:  5'- uGACGGCCCCGAcgucGAUGCcgccgauccccgUGGAacCGUCCa -3'
miRNA:   3'- gCUGCUGGGGCU----CUGCG------------ACCU--GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 8239 0.72 0.234787
Target:  5'- gGGCGACgUCGAGACGaucGACGCCg -3'
miRNA:   3'- gCUGCUGgGGCUCUGCgacCUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 41468 0.71 0.246623
Target:  5'- uCGAaGACCCCGAcGuCGC--GACGCCCg -3'
miRNA:   3'- -GCUgCUGGGGCU-CuGCGacCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 5368 0.71 0.265299
Target:  5'- gGACGAUCUCGAcGuCGaacCUGGGCGUCCa -3'
miRNA:   3'- gCUGCUGGGGCU-CuGC---GACCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 37339 0.7 0.283073
Target:  5'- uCGGCGAUCCCGAcGACGCccagcucgaagcacUgcGGugGCCg -3'
miRNA:   3'- -GCUGCUGGGGCU-CUGCG--------------A--CCugCGGg -5'
16476 3' -60.3 NC_004084.1 + 17662 0.7 0.285105
Target:  5'- gGGCGACaCCCGAgcacagggcGACGCUGGucgagcuucgagACGCUa -3'
miRNA:   3'- gCUGCUG-GGGCU---------CUGCGACC------------UGCGGg -5'
16476 3' -60.3 NC_004084.1 + 39749 0.7 0.313301
Target:  5'- gGAgGACUCCGAGGagGCUGaucccGACGCCg -3'
miRNA:   3'- gCUgCUGGGGCUCUg-CGAC-----CUGCGGg -5'
16476 3' -60.3 NC_004084.1 + 29005 0.7 0.320673
Target:  5'- uCGACGGCaaCCGcGACGCcccaggagUGGcCGCCCg -3'
miRNA:   3'- -GCUGCUGg-GGCuCUGCG--------ACCuGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 1680 0.72 0.223432
Target:  5'- gGGCGA-CCUGAucGACGCgaaGGACGUCCg -3'
miRNA:   3'- gCUGCUgGGGCU--CUGCGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 23275 0.73 0.187316
Target:  5'- gGAUGuACCCCGAgGAC-CUcGACGCCCa -3'
miRNA:   3'- gCUGC-UGGGGCU-CUGcGAcCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 22475 0.74 0.173474
Target:  5'- cCGcCGACCCCGGcGACGCcggGGACauGCUCg -3'
miRNA:   3'- -GCuGCUGGGGCU-CUGCGa--CCUG--CGGG- -5'
16476 3' -60.3 NC_004084.1 + 437 0.91 0.010265
Target:  5'- aCGGCGACCUCGAGACgGCggaGGACGCCCa -3'
miRNA:   3'- -GCUGCUGGGGCUCUG-CGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 48118 0.75 0.133722
Target:  5'- gGACGGCaucugguugCCCGAGAUGUaccGGAUGCCCu -3'
miRNA:   3'- gCUGCUG---------GGGCUCUGCGa--CCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 43746 0.75 0.143544
Target:  5'- uCGAgGACCcggCCGGGACGCucgcgggcaucgacUGGGCGCUCg -3'
miRNA:   3'- -GCUgCUGG---GGCUCUGCG--------------ACCUGCGGG- -5'
16476 3' -60.3 NC_004084.1 + 27727 0.75 0.144675
Target:  5'- uGAgGAgCCaggCGAGACGCUGGucacCGCCCa -3'
miRNA:   3'- gCUgCUgGG---GCUCUGCGACCu---GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 7810 0.75 0.152426
Target:  5'- uCGACGACCUCGA--CGCUGGAggcaCGCUCc -3'
miRNA:   3'- -GCUGCUGGGGCUcuGCGACCU----GCGGG- -5'
16476 3' -60.3 NC_004084.1 + 22846 0.74 0.156442
Target:  5'- uCGACGGCCUCGuGAUGCUcGACGaacCCCg -3'
miRNA:   3'- -GCUGCUGGGGCuCUGCGAcCUGC---GGG- -5'
16476 3' -60.3 NC_004084.1 + 41199 0.74 0.16476
Target:  5'- -cACGACgCCCGcGACGCUGGcgaaACGCCg -3'
miRNA:   3'- gcUGCUG-GGGCuCUGCGACC----UGCGGg -5'
16476 3' -60.3 NC_004084.1 + 32048 0.74 0.169067
Target:  5'- aCGACGAUCCCGAacgcGAcuCGCUGuucGACGUCCu -3'
miRNA:   3'- -GCUGCUGGGGCU----CU--GCGAC---CUGCGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.